UHGV-1448280

Genome information

Genome length 24,704 bps

CDS count 35

Completeness 64.37% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-1448280
vOTU ID	vOTU-035230
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0180236
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.8
Jumbo phage	No

Genome content
Genome length	24,704 bps
GC content	33.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	94.47%
Average CDS length	669.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1448280_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1448280_1	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-1448280_1	UniRef90	UniRef90_A0A3P1BKT0	Cytosine-specific methyltransferase	NA
UHGV-1448280_1	eggNOG-mapper	482234.SCAZ3_10455	C-5 cytosine-specific DNA methylase	NA
UHGV-1448280_1	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1448280_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1448280_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1448280_3	PHROG	phrog_12650	NA	unknown function
UHGV-1448280_3	Structural annotation	NF010673	NA	NA
UHGV-1448280_5	Structural annotation	NF007260	NA	NA
UHGV-1448280_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1448280_6	UniRef90	UniRef90_A0A6H1F453	NA	NA
UHGV-1448280_6	Pfam	PF07374	NA	DUF1492
UHGV-1448280_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1448280_6	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1448280_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1448280_7	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1448280_7	UniRef90	UniRef90_A0A2X4NG90	Terminase small subunit	NA
UHGV-1448280_7	eggNOG-mapper	562981.HMPREF0428_01825	Terminase small subunit	NA
UHGV-1448280_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1448280_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1448280_7	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1448280_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1448280_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1448280_8	UniRef90	UniRef90_A0A2X4NB78	Phage terminase, large subunit, PBSX family	NA
UHGV-1448280_8	eggNOG-mapper	562981.HMPREF0428_00985	Terminase RNAseH like domain	NA
UHGV-1448280_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1448280_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1448280_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1448280_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-1448280_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1448280_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-1448280_9	UniRef90	UniRef90_A0A2X4N9Z3	Phage portal protein, putative, A118 family	NA
UHGV-1448280_9	eggNOG-mapper	562981.HMPREF0428_00984	portal protein	NA
UHGV-1448280_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1448280_9	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1448280_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1448280_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1448280_10	UniRef90	UniRef90_A0A2X4N6F7	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-1448280_10	eggNOG-mapper	562981.HMPREF0428_00983	Phage minor capsid protein 2	NA
UHGV-1448280_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1448280_10	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1448280_10	Structural annotation	PF06152, PF03496, NF040688	NA	NA
UHGV-1448280_11	eggNOG-mapper	562982.HMPREF0432_00874	NA	NA
UHGV-1448280_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1448280_12	UniRef90	UniRef90_A0A2X4R123	Phage minor structural protein GP20	NA
UHGV-1448280_12	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-1448280_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1448280_12	Structural annotation	PF06810	NA	NA
UHGV-1448280_13	PHROG	phrog_840	major head protein	head and packaging
UHGV-1448280_13	UniRef90	UniRef90_A0A6H1F174	Phage capsid protein	NA
UHGV-1448280_13	eggNOG-mapper	562981.HMPREF0428_00981	NA	NA
UHGV-1448280_13	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-1448280_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1448280_15	UniRef90	UniRef90_A0A380K6A1	NA	NA
UHGV-1448280_15	eggNOG-mapper	562981.HMPREF0428_00979	NA	NA
UHGV-1448280_16	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1448280_16	UniRef90	UniRef90_A0A2X4N3V8	Minor capsid protein	NA
UHGV-1448280_16	eggNOG-mapper	562981.HMPREF0428_00978	Minor capsid protein	NA
UHGV-1448280_16	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1448280_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1448280_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1448280_17	UniRef90	UniRef90_A0A2X4NG99	Minor capsid protein	NA
UHGV-1448280_17	eggNOG-mapper	1246.JMEA01000006_gene45	Minor capsid protein	NA
UHGV-1448280_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1448280_17	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1448280_18	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1448280_18	UniRef90	UniRef90_A0A2X4NB85	Minor capsid protein from bacteriophage	NA
UHGV-1448280_18	eggNOG-mapper	562981.HMPREF0428_00976	Minor capsid protein from bacteriophage	NA
UHGV-1448280_18	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1448280_18	Structural annotation	PF12691	NA	NA
UHGV-1448280_19	PHROG	phrog_820	major tail protein	tail
UHGV-1448280_19	UniRef90	UniRef90_A0A0X8KMB0	Phage tail protein	NA
UHGV-1448280_19	eggNOG-mapper	562981.HMPREF0428_00975	NA	NA
UHGV-1448280_19	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-1448280_20	PHROG	phrog_1061	NA	unknown function
UHGV-1448280_20	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-1448280_20	eggNOG-mapper	562981.HMPREF0428_00974	NA	NA
UHGV-1448280_20	Structural annotation	PF10666	NA	NA
UHGV-1448280_21	PHROG	phrog_706	NA	unknown function
UHGV-1448280_21	UniRef90	UniRef90_A0A2X4RDY7	Bacteriophage Gp15 protein	NA
UHGV-1448280_21	eggNOG-mapper	562981.HMPREF0428_00973	Bacteriophage Gp15 protein	NA
UHGV-1448280_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1448280_21	Structural annotation	PF06854	NA	NA
UHGV-1448280_22	PHROG	phrog_1204	tail protein	tail
UHGV-1448280_22	UniRef90	UniRef90_A0A2X4R133	Phage-related protein	NA
UHGV-1448280_22	eggNOG-mapper	562981.HMPREF0428_00972	phage tail tape measure protein	NA
UHGV-1448280_22	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1448280_22	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1448280_22	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1448280_22	COG	COG5412	Phage-related protein	NA
UHGV-1448280_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1448280_23	UniRef90	UniRef90_A0A2X4NBW4	Phage-related protein	NA
UHGV-1448280_23	eggNOG-mapper	562981.HMPREF0428_00971	phage tail	NA
UHGV-1448280_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1448280_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1448280_24	PHROG	phrog_2270	NA	unknown function
UHGV-1448280_24	UniRef90	UniRef90_A0A2X4N412	Phage-related protein	NA
UHGV-1448280_24	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-1448280_24	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1448280_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1448280_24	COG	COG1511	NA	NA
UHGV-1448280_24	Structural annotation	PF14594, PF13620, TIGR01665, TIGR04183, COG4926	NA	NA
UHGV-1448280_25	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1448280_25	PHROG	phrog_6049	tail fiber protein	tail
UHGV-1448280_25	UniRef90	UniRef90_A0A2X4N6M2	Collagen triple helix repeat (20 copies)	NA
UHGV-1448280_25	eggNOG-mapper	562981.HMPREF0428_01809	NA	NA
UHGV-1448280_25	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1448280_25	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1448280_25	Structural annotation	PF18454	NA	NA
UHGV-1448280_26	Structural annotation	PF21231, COG0806	NA	NA
UHGV-1448280_27	PHROG	phrog_7841	NA	unknown function
UHGV-1448280_27	UniRef90	UniRef90_A0A2X4NGA9	Gp58-like protein	NA
UHGV-1448280_27	eggNOG-mapper	1461246.X2KUF9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1448280_27	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1448280_27	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1448280_27	Structural annotation	PF13884	NA	NA
UHGV-1448280_29	Structural annotation	PF07104	NA	NA
UHGV-1448280_32	PHROG	phrog_1129	holin	lysis
UHGV-1448280_32	UniRef90	UniRef90_U2RW65	Holin family protein	NA
UHGV-1448280_32	eggNOG-mapper	1321820.HMPREF1983_00916	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1448280_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1448280_32	Structural annotation	PF06946	NA	NA
UHGV-1448280_33	PHROG	phrog_1309	endolysin	lysis
UHGV-1448280_33	UniRef90	UniRef90_A0A0X8KM97	Cell wall hydrolase	NA
UHGV-1448280_33	eggNOG-mapper	1321820.HMPREF1983_00914	CHAP domain	NA
UHGV-1448280_33	Pfam	PF05257	CHAP domain	CHAP
UHGV-1448280_33	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1448280_33	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1448280_33	Structural annotation	PF08460, PF05382, TIGR02219, COG0791	NA	NA
UHGV-1448280_35	PHROG	phrog_2277	NA	unknown function