UHGV-1448306

Genome information

Genome length 37,015 bps

CDS count 58

Completeness 86.27% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1448306
vOTU ID	vOTU-035231
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0251654
BioSample	SAMEA3951750
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.52
Jumbo phage	No

Genome content
Genome length	37,015 bps
GC content	47.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.40%
Average CDS length	591.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1448306_1	KOfam	K14059	int; integrase	NA
UHGV-1448306_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1448306_1	UniRef90	UniRef90_UPI00164A4E4A	site-specific integrase	NA
UHGV-1448306_1	eggNOG-mapper	1382358.JHVN01000005_gene3032	Phage integrase family	NA
UHGV-1448306_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1448306_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1448306_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1448306_2	KOfam	K07273	acm; lysozyme	NA
UHGV-1448306_2	PHROG	phrog_291	endolysin	lysis
UHGV-1448306_2	UniRef90	UniRef90_A0A1C5ZRX7	Autolytic lysozyme	NA
UHGV-1448306_2	eggNOG-mapper	658086.HMPREF0994_03328	Glycosyl hydrolases family 25	NA
UHGV-1448306_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1448306_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1448306_2	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1448306_3	PHROG	phrog_18593	NA	unknown function
UHGV-1448306_3	UniRef90	UniRef90_R5HAU4	Carbohydrate binding domain protein	NA
UHGV-1448306_3	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-1448306_3	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1448306_3	Structural annotation	PF14600	NA	NA
UHGV-1448306_6	PHROG	phrog_18725	NA	unknown function
UHGV-1448306_6	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1448306_7	PHROG	phrog_13879	NA	unknown function
UHGV-1448306_7	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-1448306_7	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1448306_8	PHROG	phrog_1194	NA	unknown function
UHGV-1448306_8	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-1448306_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1448306_9	KOfam	K13582	podJ; localization factor PodJL	NA
UHGV-1448306_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1448306_9	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-1448306_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1448306_10	PHROG	phrog_706	NA	unknown function
UHGV-1448306_10	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-1448306_10	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-1448306_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1448306_10	Structural annotation	PF06854	NA	NA
UHGV-1448306_11	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-1448306_11	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-1448306_11	Structural annotation	PF10666	NA	NA
UHGV-1448306_12	PHROG	phrog_3099	NA	unknown function
UHGV-1448306_12	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-1448306_12	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-1448306_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1448306_13	PHROG	phrog_3266	tail completion	connector
UHGV-1448306_13	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-1448306_13	Structural annotation	PF12691	NA	NA
UHGV-1448306_14	PHROG	phrog_3366	NA	unknown function
UHGV-1448306_14	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1448306_14	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1448306_15	PHROG	phrog_18218	NA	unknown function
UHGV-1448306_15	UniRef90	UniRef90_A0A3D0FFR6	Ribonuclease	NA
UHGV-1448306_15	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-1448306_15	Structural annotation	PF06946	NA	NA
UHGV-1448306_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1448306_16	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-1448306_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-1448306_17	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-1448306_17	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1448306_17	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1448306_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1448306_18	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-1448306_18	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-1448306_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1448306_19	PHROG	phrog_28802	NA	unknown function
UHGV-1448306_19	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1448306_20	PHROG	phrog_20016	NA	unknown function
UHGV-1448306_20	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-1448306_20	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1448306_20	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1448306_21	PHROG	phrog_16490	NA	unknown function
UHGV-1448306_21	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-1448306_22	PHROG	phrog_22984	NA	unknown function
UHGV-1448306_23	PHROG	phrog_21718	NA	unknown function
UHGV-1448306_23	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1448306_24	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1448306_24	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-1448306_24	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1448306_24	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-1448306_25	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-1448306_25	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-1448306_26	PHROG	phrog_3754	NA	unknown function
UHGV-1448306_26	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1448306_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1448306_27	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-1448306_27	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-1448306_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1448306_27	COG	COG2369	NA	NA
UHGV-1448306_27	Structural annotation	PF06152	NA	NA
UHGV-1448306_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1448306_28	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-1448306_28	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-1448306_28	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1448306_28	Structural annotation	PF11114	NA	NA
UHGV-1448306_29	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-1448306_29	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-1448306_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-1448306_30	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-1448306_30	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1448306_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1448306_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1448306_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1448306_31	UniRef90	UniRef90_R6RP56	Phage terminase large subunit pbsx family	NA
UHGV-1448306_31	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-1448306_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1448306_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1448306_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1448306_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1448306_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1448306_32	UniRef90	UniRef90_A0A7X5CBE4	Restriction alleviation protein, Lar family	NA
UHGV-1448306_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1448306_32	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1448306_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1448306_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1448306_33	UniRef90	UniRef90_R6SKL2	Phage terminase small subunit	NA
UHGV-1448306_33	eggNOG-mapper	1280692.AUJL01000027_gene2167	Terminase small subunit	NA
UHGV-1448306_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1448306_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1448306_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1448306_34	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-1448306_35	PHROG	phrog_3886	NA	unknown function
UHGV-1448306_35	eggNOG-mapper	1298920.KI911353_gene2686	NA	NA
UHGV-1448306_36	KOfam	K03744	lemA; LemA protein	NA
UHGV-1448306_36	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-1448306_36	UniRef90	UniRef90_A0A6N2WCF4	LemA family protein	NA
UHGV-1448306_36	eggNOG-mapper	742740.HMPREF9474_02293	LemA family	NA
UHGV-1448306_36	Pfam	PF04011	LemA family	LemA
UHGV-1448306_36	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-1448306_36	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-1448306_38	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-1448306_39	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1448306_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1448306_39	UniRef90	UniRef90_A0A412EKX4	Adenylyl-sulfate reductase	NA
UHGV-1448306_39	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1448306_39	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1448306_39	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1448306_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1448306_39	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1448306_40	PHROG	phrog_4433	NA	unknown function
UHGV-1448306_40	UniRef90	UniRef90_UPI0015C58C2D	NA	NA
UHGV-1448306_40	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-1448306_40	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1448306_43	Structural annotation	PF04936	NA	NA
UHGV-1448306_45	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1448306_45	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-1448306_45	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-1448306_45	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-1448306_47	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1448306_47	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-1448306_47	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1448306_47	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1448306_47	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1448306_48	PHROG	phrog_7566	NA	unknown function
UHGV-1448306_48	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-1448306_48	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-1448306_49	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1448306_49	UniRef90	UniRef90_A0A174WPU3	Prophage Lp1 protein 19	NA
UHGV-1448306_49	eggNOG-mapper	1304866.K413DRAFT_3016	NA	NA
UHGV-1448306_49	Pfam	PF12684	NA	DUF3799
UHGV-1448306_49	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1448306_49	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1448306_50	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1448306_50	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1448306_50	UniRef90	UniRef90_A0A350S1U2	Recombinase	NA
UHGV-1448306_50	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-1448306_50	Pfam	PF03837	RecT family	RecT
UHGV-1448306_50	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1448306_50	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1448306_51	PHROG	phrog_30234	NA	unknown function
UHGV-1448306_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1448306_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1448306_57	UniRef90	UniRef90_N1ZZY4	HTH cro/C1-type domain-containing protein	NA
UHGV-1448306_57	eggNOG-mapper	97139.C824_05937	Helix-turn-helix XRE-family like proteins	NA
UHGV-1448306_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1448306_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1448306_57	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA