UHGV-1449255

Genome information

Genome length 28,322 bps

CDS count 46

Completeness 70.77% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-1449255
vOTU ID	vOTU-035170
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0201964
BioSample	SAMN02334055
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.33
Jumbo phage	No

Genome content
Genome length	28,322 bps
GC content	49.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.72%
Average CDS length	566.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1449255_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1449255_2	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-1449255_2	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-1449255_2	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1449255_3	PHROG	phrog_3558	tail protein	tail
UHGV-1449255_3	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1449255_3	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-1449255_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1449255_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1449255_3	COG	COG4926	Phage-related protein	NA
UHGV-1449255_3	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-1449255_4	PHROG	phrog_372	tail protein	tail
UHGV-1449255_4	UniRef90	UniRef90_UPI0009E1EED3	NA	NA
UHGV-1449255_4	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-1449255_4	Pfam	PF05895	NA	DUF859
UHGV-1449255_4	COG	COG4675	Phage tail collar domain	NA
UHGV-1449255_4	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1449255_5	UniRef90	UniRef90_UPI001106168F	SAP domain-containing protein	NA
UHGV-1449255_5	eggNOG-mapper	1304866.K413DRAFT_1250	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-1449255_5	Pfam	PF02037	SAP domain	SAP
UHGV-1449255_6	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1449255_7	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1449255_7	PHROG	phrog_95	integrase	integration and excision
UHGV-1449255_7	UniRef90	UniRef90_A0A0V8QI90	Recombinase domain-containing protein	NA
UHGV-1449255_7	eggNOG-mapper	483218.BACPEC_01184	Resolvase, N terminal domain	NA
UHGV-1449255_7	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1449255_7	Pfam	PF07508	Recombinase	Recombinase
UHGV-1449255_7	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1449255_7	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1449255_8	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1449255_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1449255_9	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1449255_9	UniRef90	UniRef90_A0A3E2N8L6	Helix-turn-helix domain-containing protein	NA
UHGV-1449255_9	eggNOG-mapper	411461.DORFOR_02262	Helix-turn-helix XRE-family like proteins	NA
UHGV-1449255_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1449255_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1449255_9	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-1449255_16	PHROG	phrog_13321	NA	unknown function
UHGV-1449255_16	UniRef90	UniRef90_C6IMG1	Radical SAM core domain-containing protein	NA
UHGV-1449255_16	eggNOG-mapper	457421.CBFG_04971	NA	NA
UHGV-1449255_16	COG	COG1533	DNA repair photolyase	NA
UHGV-1449255_16	Structural annotation	PF20903, MF_00660, TIGR04470, COG0535	NA	NA
UHGV-1449255_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1449255_17	UniRef90	UniRef90_UPI001C3A3B51	Siphovirus Gp157 family protein	NA
UHGV-1449255_17	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-1449255_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1449255_17	Structural annotation	PF05565	NA	NA
UHGV-1449255_18	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1449255_18	UniRef90	UniRef90_A0A843H8D6	ATP-binding protein	NA
UHGV-1449255_18	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-1449255_18	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1449255_19	PHROG	phrog_18107	NA	unknown function
UHGV-1449255_19	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-1449255_19	Structural annotation	PF05037	NA	NA
UHGV-1449255_20	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1449255_20	UniRef90	UniRef90_UPI00164AE2A5	NA	NA
UHGV-1449255_20	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-1449255_20	Pfam	PF06356	NA	DUF1064
UHGV-1449255_20	Structural annotation	PF06356	NA	NA
UHGV-1449255_22	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1449255_22	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1449255_22	UniRef90	UniRef90_R5YVN2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1449255_22	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-1449255_22	Pfam	PF00692	dUTPase	dUTPase
UHGV-1449255_22	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1449255_22	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1449255_22	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1449255_23	PHROG	phrog_6721	NA	unknown function
UHGV-1449255_23	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-1449255_23	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1449255_24	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1449255_24	UniRef90	UniRef90_A0A174S3H8	Phage replisome organizer, putative, N-terminal region	NA
UHGV-1449255_24	eggNOG-mapper	1567014.A0A0A7RTS3_9VIRU	calcium ion binding	NA
UHGV-1449255_24	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1449255_24	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1449255_24	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1449255_25	PHROG	phrog_9804	NA	unknown function
UHGV-1449255_25	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-1449255_25	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-1449255_25	AcrCatalog	cluster_137185	NA	NA
UHGV-1449255_25	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1449255_25	Structural annotation	PF11417	NA	NA
UHGV-1449255_26	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-1449255_26	Structural annotation	PF18789	NA	NA
UHGV-1449255_27	eggNOG-mapper	1297617.JPJD01000020_gene313	NA	NA
UHGV-1449255_28	PHROG	phrog_3392	NA	unknown function
UHGV-1449255_28	UniRef90	UniRef90_Q6J807	Pas24	NA
UHGV-1449255_28	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-1449255_28	Pfam	PF04448	NA	DUF551
UHGV-1449255_28	Structural annotation	NF041588	NA	NA
UHGV-1449255_31	PHROG	phrog_4019	NA	unknown function
UHGV-1449255_31	UniRef90	UniRef90_F9PY75	Conserved domain protein	NA
UHGV-1449255_33	Structural annotation	PF09889, COG4068	NA	NA
UHGV-1449255_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1449255_34	UniRef90	UniRef90_UPI0007741D7F	NA	NA
UHGV-1449255_34	eggNOG-mapper	748727.CLJU_c03460	sigma factor activity	NA
UHGV-1449255_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1449255_34	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-1449255_35	PHROG	phrog_12517	NA	unknown function
UHGV-1449255_35	UniRef90	UniRef90_UPI001B9CE7F5	chromosome partitioning protein ParB	NA
UHGV-1449255_35	eggNOG-mapper	673837.D2IZS8_9CAUD	helicase activity	NA
UHGV-1449255_35	PADLOC	MTase_II_00162	Type II methyltransferase	RM
UHGV-1449255_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1449255_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1449255_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1449255_36	UniRef90	UniRef90_A0A3R6SKK4	Terminase small subunit	NA
UHGV-1449255_36	eggNOG-mapper	195103.CPF_0948	Terminase small subunit	NA
UHGV-1449255_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1449255_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1449255_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1449255_38	PHROG	phrog_1233	NA	unknown function
UHGV-1449255_38	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-1449255_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1449255_39	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1449255_39	UniRef90	UniRef90_A0A1C5PQJ7	Phage terminase, large subunit, PBSX family	NA
UHGV-1449255_39	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-1449255_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1449255_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1449255_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1449255_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-1449255_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1449255_40	PHROG	phrog_937	hemolysin	other
UHGV-1449255_40	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-1449255_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-1449255_41	UniRef90	UniRef90_UPI001C0F698D	phage portal protein	NA
UHGV-1449255_41	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1449255_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1449255_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1449255_42	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1449255_42	UniRef90	UniRef90_UPI001C0FAD87	phage head morphogenesis protein	NA
UHGV-1449255_42	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-1449255_42	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1449255_42	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1449255_42	COG	COG2369	NA	NA
UHGV-1449255_42	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1449255_44	PHROG	phrog_443	holin	lysis
UHGV-1449255_44	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-1449255_44	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-1449255_44	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1449255_44	Structural annotation	PF16945	NA	NA
UHGV-1449255_45	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1449255_45	PHROG	phrog_14030	NA	unknown function
UHGV-1449255_45	UniRef90	UniRef90_A0A1Y4F727	NlpC/P60 domain-containing protein	NA
UHGV-1449255_45	eggNOG-mapper	641107.CDLVIII_3774	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1449255_45	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1449255_45	Pfam	PF01476	LysM domain	LysM
UHGV-1449255_45	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1449255_45	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1449255_45	Structural annotation	PF05382, PF01471, NF038080, NF033742, COG3409, COG1388	NA	NA
UHGV-1449255_46	eggNOG-mapper	411461.DORFOR_01166	COG NOG36366 non supervised orthologous group	NA