UHGV-1449768

Genome information

Genome length 24,640 bps

CDS count 32

Completeness 65.00% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1449768
vOTU ID	vOTU-035249
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0179837
BioSample	SAMEA2042508
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.4
Jumbo phage	No

Genome content
Genome length	24,640 bps
GC content	47.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.32%
Average CDS length	715.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1449768_2	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1449768_2	UniRef90	UniRef90_UPI0009337475	ATP-binding protein	NA
UHGV-1449768_2	eggNOG-mapper	999413.HMPREF1094_00235	AAA domain	NA
UHGV-1449768_2	Pfam	PF13479	AAA domain	AAA_24
UHGV-1449768_2	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1449768_3	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1449768_3	PHROG	phrog_1499	NA	unknown function
UHGV-1449768_3	UniRef90	UniRef90_A0A396QCD6	Chromosome segregation protein SMC	NA
UHGV-1449768_3	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-1449768_3	Pfam	PF13476	AAA domain	AAA_23
UHGV-1449768_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1449768_8	UniRef90	UniRef90_A0A3B9SF96	HTH cro/C1-type domain-containing protein	NA
UHGV-1449768_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1449768_8	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1449768_9	UniRef90	UniRef90_A0A6A8SH21	Helix-turn-helix domain-containing protein	NA
UHGV-1449768_12	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1449768_12	PHROG	phrog_435	endolysin	lysis
UHGV-1449768_12	UniRef90	UniRef90_UPI0018AB36A8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1449768_12	eggNOG-mapper	908340.HMPREF9406_2562	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1449768_12	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1449768_12	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1449768_12	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1449768_13	PHROG	phrog_199	holin	lysis
UHGV-1449768_13	UniRef90	UniRef90_UPI001914E8AA	phage holin family protein	NA
UHGV-1449768_13	eggNOG-mapper	908340.HMPREF9406_0810	Bacteriophage holin family	NA
UHGV-1449768_13	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1449768_13	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1449768_13	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1449768_14	UniRef90	UniRef90_A6BEQ0	SGNH_hydro domain-containing protein	NA
UHGV-1449768_14	Structural annotation	PF16255, NF007819, COG2845	NA	NA
UHGV-1449768_15	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-1449768_16	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1449768_16	PHROG	phrog_6320	tail fiber protein	tail
UHGV-1449768_16	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-1449768_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1449768_17	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-1449768_17	Structural annotation	PF19714	NA	NA
UHGV-1449768_18	PHROG	phrog_5717	tail protein	tail
UHGV-1449768_18	UniRef90	UniRef90_A2HAZ6	Tail fiber protein, putative	NA
UHGV-1449768_18	eggNOG-mapper	658088.HMPREF0987_01104	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1449768_18	COG	COG4675	Phage tail collar domain	NA
UHGV-1449768_19	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1449768_19	UniRef90	UniRef90_UPI001D01FD0A	phage tail protein	NA
UHGV-1449768_19	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1449768_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1449768_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1449768_19	COG	COG4926	Phage-related protein	NA
UHGV-1449768_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1449768_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1449768_20	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-1449768_20	eggNOG-mapper	999413.HMPREF1094_02000	phage tail	NA
UHGV-1449768_20	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1449768_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-1449768_20	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1449768_21	PHROG	phrog_23464	NA	unknown function
UHGV-1449768_21	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-1449768_21	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-1449768_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1449768_21	Structural annotation	PF20155	NA	NA
UHGV-1449768_22	PHROG	phrog_709	NA	unknown function
UHGV-1449768_22	UniRef90	UniRef90_Q928G5	Lin2570 protein	NA
UHGV-1449768_22	eggNOG-mapper	272626.lin2570	NA	NA
UHGV-1449768_22	Structural annotation	PF19591	NA	NA
UHGV-1449768_23	PHROG	phrog_88	major tail protein	tail
UHGV-1449768_23	UniRef90	UniRef90_A0A3E3EG64	Phage tail protein	NA
UHGV-1449768_23	eggNOG-mapper	1123263.AUKY01000027_gene840	phage major tail protein, phi13 family	NA
UHGV-1449768_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1449768_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1449768_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1449768_24	UniRef90	UniRef90_UPI000428028A	HK97 gp10 family phage protein	NA
UHGV-1449768_24	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-1449768_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1449768_24	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1449768_25	UniRef90	UniRef90_Q0H234	Aminopeptidase	NA
UHGV-1449768_25	eggNOG-mapper	365048.Q0H234_9CAUD	aminopeptidase activity	NA
UHGV-1449768_25	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1449768_26	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-1449768_26	Structural annotation	PF16467, MF_01457, TIGR01563, COG5614	NA	NA
UHGV-1449768_27	PHROG	phrog_749	NA	unknown function
UHGV-1449768_27	UniRef90	UniRef90_UPI0018CD5F53	phage head-tail connector protein	NA
UHGV-1449768_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-1449768_28	UniRef90	UniRef90_A0A3E3EGM4	Phage major capsid protein	NA
UHGV-1449768_28	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-1449768_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1449768_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1449768_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1449768_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1449768_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1449768_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1449768_29	UniRef90	UniRef90_A0A3E3EG77	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1449768_29	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1449768_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1449768_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1449768_29	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1449768_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-1449768_30	UniRef90	UniRef90_A0A3E3EI59	Phage portal protein	NA
UHGV-1449768_30	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1449768_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1449768_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1449768_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1449768_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1449768_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1449768_31	UniRef90	UniRef90_A0A3E3EH16	Terminase	NA
UHGV-1449768_31	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1449768_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1449768_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1449768_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1449768_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1449768_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1449768_32	UniRef90	UniRef90_UPI001D06BD2A	P27 family phage terminase small subunit	NA
UHGV-1449768_32	eggNOG-mapper	1405.DJ92_861	NA	NA
UHGV-1449768_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1449768_32	COG	COG5484	NA	NA
UHGV-1449768_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA