UHGV-1450139

Genome information

Genome length 26,653 bps

CDS count 52

Completeness 67.36% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-1450139
vOTU ID	vOTU-035259
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0192434
BioSample	NA
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.64
Jumbo phage	No

Genome content
Genome length	26,653 bps
GC content	43.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	84.49%
Average CDS length	439.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1450139_2	PHROG	phrog_2598	NA	unknown function
UHGV-1450139_2	UniRef90	UniRef90_UPI00189E5D5D	NA	NA
UHGV-1450139_2	eggNOG-mapper	397290.C810_03193	NA	NA
UHGV-1450139_2	Pfam	PF03235	NA	DUF262
UHGV-1450139_2	COG	COG1479	NA	NA
UHGV-1450139_5	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-1450139_5	eggNOG-mapper	742733.HMPREF9469_02894	NA	NA
UHGV-1450139_5	Structural annotation	PF19962, COG1579	NA	NA
UHGV-1450139_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1450139_6	UniRef90	UniRef90_A0A417C341	RNA polymerase subunit sigma-70	NA
UHGV-1450139_6	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-1450139_7	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1450139_7	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1450139_7	UniRef90	UniRef90_A0A3R6MQZ4	ParA family protein	NA
UHGV-1450139_7	eggNOG-mapper	1235792.C808_05327	Anion-transporting ATPase	NA
UHGV-1450139_7	Pfam	PF13614	AAA domain	AAA_31
UHGV-1450139_7	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1450139_7	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-1450139_8	PHROG	phrog_6264	NA	unknown function
UHGV-1450139_8	eggNOG-mapper	742723.HMPREF9477_00914	NA	NA
UHGV-1450139_9	PHROG	phrog_7540	NA	unknown function
UHGV-1450139_9	eggNOG-mapper	1235792.C808_05329	NA	NA
UHGV-1450139_10	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1450139_10	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1450139_10	UniRef90	UniRef90_A0A416L200	Terminase small subunit	NA
UHGV-1450139_10	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-1450139_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1450139_10	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1450139_10	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1450139_11	UniRef90	UniRef90_A0A373CCX8	Transposase	NA
UHGV-1450139_11	eggNOG-mapper	1200567.JNKD01000068_gene2049	Transposase DDE domain	NA
UHGV-1450139_11	Pfam	PF01609	Transposase DDE domain	DDE_Tnp_1
UHGV-1450139_11	COG	COG5421	Transposase	NA
UHGV-1450139_11	Structural annotation	PF13701, NF033559, COG5421	NA	NA
UHGV-1450139_12	UniRef90	UniRef90_A0A1I6K568	X-X-X-Leu-X-X-Gly heptad repeat-containing protein	NA
UHGV-1450139_13	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-1450139_13	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1450139_14	PHROG	phrog_29775	NA	unknown function
UHGV-1450139_14	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-1450139_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-1450139_14	Structural annotation	PF04466, MF_04145, NF003296, COG5410	NA	NA
UHGV-1450139_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1450139_15	PHROG	phrog_10250	NA	unknown function
UHGV-1450139_15	UniRef90	UniRef90_A0A357D1D0	Terminase (Fragment)	NA
UHGV-1450139_15	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-1450139_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-1450139_15	Structural annotation	PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1450139_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-1450139_16	UniRef90	UniRef90_A0A357AZC3	Capsid protein (Fragment)	NA
UHGV-1450139_16	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1450139_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-1450139_17	UniRef90	UniRef90_A0A357AYR9	Capsid protein (Fragment)	NA
UHGV-1450139_17	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1450139_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1450139_18	UniRef90	UniRef90_A0A7X0VJR4	Capsid protein	NA
UHGV-1450139_18	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-1450139_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1450139_18	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-1450139_18	Structural annotation	PF06152	NA	NA
UHGV-1450139_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1450139_19	UniRef90	UniRef90_A0A1C6J8Y1	Phage minor capsid protein 2	NA
UHGV-1450139_19	eggNOG-mapper	483218.BACPEC_01158	Phage minor capsid protein 2	NA
UHGV-1450139_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1450139_19	COG	COG2369	NA	NA
UHGV-1450139_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1450139_21	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-1450139_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-1450139_22	UniRef90	UniRef90_A0A3R6QST7	Phage capsid protein	NA
UHGV-1450139_22	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-1450139_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1450139_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1450139_24	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-1450139_25	PHROG	phrog_8710	NA	unknown function
UHGV-1450139_25	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-1450139_25	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1450139_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1450139_26	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1450139_27	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1450139_27	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-1450139_27	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-1450139_27	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1450139_27	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1450139_28	PHROG	phrog_820	major tail protein	tail
UHGV-1450139_28	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-1450139_28	COG	COG5492	NA	NA
UHGV-1450139_29	PHROG	phrog_820	major tail protein	tail
UHGV-1450139_29	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-1450139_29	COG	COG5492	NA	NA
UHGV-1450139_30	PHROG	phrog_8300	NA	unknown function
UHGV-1450139_30	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-1450139_32	PHROG	phrog_8355	NA	unknown function
UHGV-1450139_32	UniRef90	UniRef90_UPI0011579C35	Gp15 family bacteriophage protein	NA
UHGV-1450139_32	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-1450139_32	Structural annotation	PF06854	NA	NA
UHGV-1450139_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1450139_33	UniRef90	UniRef90_B8I8Z5	Phage-related protein-like protein	NA
UHGV-1450139_33	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-1450139_33	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1450139_33	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1450139_34	PHROG	phrog_31167	NA	unknown function
UHGV-1450139_34	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-1450139_34	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1450139_35	PHROG	phrog_17020	NA	unknown function
UHGV-1450139_35	eggNOG-mapper	1120746.CCNL01000014_gene2105	tape measure	NA
UHGV-1450139_35	COG	COG1511	NA	NA
UHGV-1450139_36	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-1450139_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1450139_37	PHROG	phrog_1194	NA	unknown function
UHGV-1450139_37	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-1450139_37	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1450139_38	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-1450139_39	PHROG	phrog_13879	NA	unknown function
UHGV-1450139_39	eggNOG-mapper	1298920.KI911353_gene4839	NA	NA
UHGV-1450139_40	PHROG	phrog_13879	NA	unknown function
UHGV-1450139_40	eggNOG-mapper	1298920.KI911353_gene4839	NA	NA
UHGV-1450139_41	PHROG	phrog_13879	NA	unknown function
UHGV-1450139_41	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-1450139_42	PHROG	phrog_18725	NA	unknown function
UHGV-1450139_42	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-1450139_43	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-1450139_44	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-1450139_45	eggNOG-mapper	742740.HMPREF9474_03519	ATPase involved in DNA repair	NA
UHGV-1450139_45	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1450139_48	PHROG	phrog_1382	NA	unknown function
UHGV-1450139_48	UniRef90	UniRef90_A0A3E2UAD4	ASCH domain-containing protein	NA
UHGV-1450139_48	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1450139_48	Structural annotation	NF040910	NA	NA
UHGV-1450139_49	PHROG	phrog_1382	NA	unknown function
UHGV-1450139_49	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-1450139_49	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1450139_50	PHROG	phrog_4105	NA	unknown function
UHGV-1450139_50	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-1450139_51	PHROG	phrog_1129	holin	lysis
UHGV-1450139_51	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-1450139_51	eggNOG-mapper	1321782.HMPREF1986_00360	NA	NA
UHGV-1450139_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1450139_51	Structural annotation	PF06946	NA	NA