UHGV-1450142

Genome information

Genome length 26,655 bps

CDS count 48

Completeness 92.97% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-1450142
vOTU ID	vOTU-068281
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0192446
BioSample	SAMN02334029
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.19
Jumbo phage	No

Genome content
Genome length	26,655 bps
GC content	43.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.19%
Average CDS length	508.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1450142_1	PHROG	phrog_13845	NA	unknown function
UHGV-1450142_1	eggNOG-mapper	508419.F8J158_9CAUD	NA	NA
UHGV-1450142_1	Structural annotation	PF05119, COG3747	NA	NA
UHGV-1450142_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1450142_2	UniRef90	UniRef90_A0A8J6TY49	Terminase large subunit	NA
UHGV-1450142_2	eggNOG-mapper	887929.HMP0721_1268	Phage Terminase	NA
UHGV-1450142_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1450142_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1450142_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1450142_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1450142_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1450142_3	UniRef90	UniRef90_UPI00195B66CE	phage portal protein	NA
UHGV-1450142_3	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-1450142_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1450142_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1450142_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1450142_4	KOfam	K06904	NA	NA
UHGV-1450142_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1450142_4	UniRef90	UniRef90_A0A1C5W530	Phage prohead protease, HK97 family	NA
UHGV-1450142_4	eggNOG-mapper	742740.HMPREF9474_04305	Phage prohead protease, HK97 family	NA
UHGV-1450142_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1450142_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1450142_4	COG	COG3740	Phage head maturation protease	NA
UHGV-1450142_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1450142_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1450142_5	UniRef90	UniRef90_A0A3B8UB33	Phage major capsid protein	NA
UHGV-1450142_5	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1450142_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1450142_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1450142_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1450142_7	PHROG	phrog_5223	neck protein	connector
UHGV-1450142_7	UniRef90	UniRef90_A0A3B9G1D8	DNA-packaging protein	NA
UHGV-1450142_7	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-1450142_7	Structural annotation	TIGR01560	NA	NA
UHGV-1450142_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1450142_8	UniRef90	UniRef90_UPI0002D7E397	phage head closure protein	NA
UHGV-1450142_8	eggNOG-mapper	1444310.JANV01000004_gene2678	head-tail adaptor	NA
UHGV-1450142_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1450142_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1450142_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1450142_9	UniRef90	UniRef90_UPI0019D0A5EF	HK97 gp10 family phage protein	NA
UHGV-1450142_9	eggNOG-mapper	658655.HMPREF0988_00539	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1450142_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1450142_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1450142_10	UniRef90	UniRef90_C3DN78	Prophage pi2 protein 38	NA
UHGV-1450142_10	eggNOG-mapper	1145276.T479_12220	NA	NA
UHGV-1450142_10	Structural annotation	PF20765	NA	NA
UHGV-1450142_11	PHROG	phrog_88	major tail protein	tail
UHGV-1450142_11	UniRef90	UniRef90_A0A7X9C2T5	Phage tail protein	NA
UHGV-1450142_11	eggNOG-mapper	1408437.JNJN01000050_gene1045	phage major tail protein, phi13 family	NA
UHGV-1450142_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1450142_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1450142_12	eggNOG-mapper	1280681.AUJZ01000038_gene340	NA	NA
UHGV-1450142_12	Structural annotation	PF11836	NA	NA
UHGV-1450142_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1450142_13	UniRef90	UniRef90_UPI000C7C3162	phage tail tape measure protein	NA
UHGV-1450142_13	eggNOG-mapper	742738.HMPREF9460_04078	domain protein	NA
UHGV-1450142_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1450142_13	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-1450142_15	PHROG	phrog_18110	NA	unknown function
UHGV-1450142_15	UniRef90	UniRef90_UPI00085C46C7	phage tail protein	NA
UHGV-1450142_15	eggNOG-mapper	573061.Clocel_0796	Phage minor structural protein	NA
UHGV-1450142_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1450142_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1450142_15	COG	COG4926	Phage-related protein	NA
UHGV-1450142_16	PHROG	phrog_443	holin	lysis
UHGV-1450142_16	UniRef90	UniRef90_A0A542ZAT8	R1t family holin	NA
UHGV-1450142_16	eggNOG-mapper	553184.ATORI0001_1165	Putative lactococcus lactis phage r1t holin	NA
UHGV-1450142_16	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1450142_16	Structural annotation	PF16945	NA	NA
UHGV-1450142_17	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1450142_17	PHROG	phrog_7698	endolysin	lysis
UHGV-1450142_17	UniRef90	UniRef90_J4WCY0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1450142_17	eggNOG-mapper	936375.HMPREF1152_1092	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-1450142_17	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1450142_17	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1450142_17	Structural annotation	PF01510, MF_04111, NF008758, NF038080, COG5632	NA	NA
UHGV-1450142_18	PHROG	phrog_4105	NA	unknown function
UHGV-1450142_18	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-1450142_19	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1450142_19	UniRef90	UniRef90_A0A8F2F0X6	Metallophosphoesterase	NA
UHGV-1450142_19	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-1450142_19	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1450142_19	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-1450142_19	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-1450142_21	UniRef90	UniRef90_J4KF16	DNA-binding helix-turn-helix protein	NA
UHGV-1450142_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1450142_21	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-1450142_23	UniRef90	UniRef90_R6GNZ5	DNA-binding helix-turn-helix protein	NA
UHGV-1450142_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1450142_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1450142_23	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1450142_24	KOfam	K14059	int; integrase	NA
UHGV-1450142_24	PHROG	phrog_1	integrase	integration and excision
UHGV-1450142_24	UniRef90	UniRef90_A0A7Y9B158	Site-specific integrase	NA
UHGV-1450142_24	eggNOG-mapper	936375.HMPREF1152_0651	Belongs to the 'phage' integrase family	NA
UHGV-1450142_24	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1450142_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1450142_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1450142_24	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1450142_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1450142_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1450142_25	UniRef90	UniRef90_UPI0009E27F2F	helix-turn-helix transcriptional regulator	NA
UHGV-1450142_25	eggNOG-mapper	324057.Pjdr2_5181	Helix-turn-helix domain	NA
UHGV-1450142_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1450142_25	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1450142_25	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1450142_26	UniRef90	UniRef90_UPI0011C7E343	helix-turn-helix transcriptional regulator	NA
UHGV-1450142_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1450142_26	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1450142_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1450142_29	UniRef90	UniRef90_M5RHB3	Phage-type endonuclease	NA
UHGV-1450142_29	eggNOG-mapper	1196028.ALEF01000043_gene488	YqaJ-like viral recombinase domain	NA
UHGV-1450142_29	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1450142_29	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1450142_29	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1450142_29	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1450142_30	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1450142_30	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1450142_30	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1450142_30	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-1450142_31	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1450142_31	UniRef90	UniRef90_A0A3B8SUV3	DnaB_2 domain-containing protein	NA
UHGV-1450142_31	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-1450142_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1450142_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1450142_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1450142_34	UniRef90	UniRef90_A0A350PKG4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1450142_34	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-1450142_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1450142_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1450142_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1450142_36	PHROG	phrog_10714	NA	unknown function
UHGV-1450142_36	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-1450142_38	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1450142_38	UniRef90	UniRef90_A0A645AU75	NA	NA
UHGV-1450142_38	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-1450142_38	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1450142_38	Structural annotation	PF18909	NA	NA
UHGV-1450142_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1450142_40	PHROG	phrog_10714	NA	unknown function
UHGV-1450142_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1450142_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1450142_46	UniRef90	UniRef90_A0A7C6YG11	Single-stranded DNA-binding protein	NA
UHGV-1450142_46	eggNOG-mapper	936375.HMPREF1152_1764	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1450142_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1450142_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1450142_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1450142_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1450142_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1450142_47	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1450142_47	UniRef90	UniRef90_A0A1C5VKJ4	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1450142_47	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-1450142_47	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1450142_47	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1450142_47	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1450142_48	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1450142_48	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1450142_48	UniRef90	UniRef90_A0A3B9G153	HNH endonuclease	NA
UHGV-1450142_48	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-1450142_48	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1450142_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA