UHGV-1450214

Genome information

Genome length 24,931 bps

CDS count 33

Completeness 59.55% (medium-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-1450214
vOTU ID	vOTU-031581
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0181698
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.53
Jumbo phage	No

Genome content
Genome length	24,931 bps
GC content	38.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	91.17%
Average CDS length	694.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1450214_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1450214_1	PHROG	phrog_2338	endolysin	lysis
UHGV-1450214_1	UniRef90	UniRef90_UPI001BA840E6	peptidoglycan recognition protein family protein	NA
UHGV-1450214_1	eggNOG-mapper	565664.EFXG_04102	Ami_2	NA
UHGV-1450214_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1450214_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1450214_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1450214_2	PHROG	phrog_881	holin	lysis
UHGV-1450214_2	UniRef90	UniRef90_A0A0V7Y5Y4	Holin	NA
UHGV-1450214_2	eggNOG-mapper	565664.EFXG_03970	Putative phage holin Dp-1	NA
UHGV-1450214_2	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1450214_2	Structural annotation	PF16938	NA	NA
UHGV-1450214_3	PHROG	phrog_1009	NA	unknown function
UHGV-1450214_3	eggNOG-mapper	1104325.M7W_1372	NA	NA
UHGV-1450214_4	PHROG	phrog_1382	NA	unknown function
UHGV-1450214_4	eggNOG-mapper	1140002.I570_03995	NA	NA
UHGV-1450214_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1450214_4	Structural annotation	NF040910	NA	NA
UHGV-1450214_5	PHROG	phrog_1382	NA	unknown function
UHGV-1450214_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1450214_5	Structural annotation	NF040910	NA	NA
UHGV-1450214_6	PHROG	phrog_1536	NA	unknown function
UHGV-1450214_6	UniRef90	UniRef90_S4DEY7	HsdM_N domain-containing protein	NA
UHGV-1450214_6	eggNOG-mapper	1260356.D920_01753	NA	NA
UHGV-1450214_7	PHROG	phrog_10054	NA	unknown function
UHGV-1450214_7	UniRef90	UniRef90_UPI00071BFEDE	BppU family phage baseplate upper protein	NA
UHGV-1450214_7	eggNOG-mapper	1158604.I591_00541	InterPro IPR018913 Domain of	NA
UHGV-1450214_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1450214_8	PHROG	phrog_11663	minor head protein	head and packaging
UHGV-1450214_8	UniRef90	UniRef90_C9BWV7	Predicted protein	NA
UHGV-1450214_8	eggNOG-mapper	565664.EFXG_01758	NA	NA
UHGV-1450214_9	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-1450214_9	PHROG	phrog_7158	NA	unknown function
UHGV-1450214_9	UniRef90	UniRef90_C9BWV6	Predicted protein	NA
UHGV-1450214_9	eggNOG-mapper	565664.EFXG_01759	NA	NA
UHGV-1450214_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1450214_9	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1450214_9	Structural annotation	PF10651, PF14582, MF_00905, NF008359, COG1409	NA	NA
UHGV-1450214_10	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1450214_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1450214_10	UniRef90	UniRef90_A0A6N3FL01	Murein DD-endopeptidase MepM	NA
UHGV-1450214_10	eggNOG-mapper	1158604.I591_00538	Prophage endopeptidase tail	NA
UHGV-1450214_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1450214_10	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1450214_10	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1450214_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1450214_10	COG	COG4926	Phage-related protein	NA
UHGV-1450214_10	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-1450214_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1450214_11	UniRef90	UniRef90_A0A377L438	Phage-related protein	NA
UHGV-1450214_11	eggNOG-mapper	1158604.I591_00537	phage tail	NA
UHGV-1450214_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-1450214_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1450214_12	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1450214_12	UniRef90	UniRef90_A0A1A6Z382	Phage tail tape measure protein	NA
UHGV-1450214_12	eggNOG-mapper	1158604.I591_00536	Phage-related minor tail protein	NA
UHGV-1450214_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1450214_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1450214_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1450214_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1450214_13	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-1450214_13	UniRef90	UniRef90_W7D9N8	NA	NA
UHGV-1450214_13	eggNOG-mapper	1158604.I591_00535	NA	NA
UHGV-1450214_13	Structural annotation	PF11836	NA	NA
UHGV-1450214_14	PHROG	phrog_11502	tail protein	tail
UHGV-1450214_14	UniRef90	UniRef90_A0A377KN14	Phi13 family phage major tail protein	NA
UHGV-1450214_14	eggNOG-mapper	1158604.I591_00534	NA	NA
UHGV-1450214_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1450214_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1450214_15	UniRef90	UniRef90_A0A132YZK7	HK97 gp10 family phage protein	NA
UHGV-1450214_15	eggNOG-mapper	565664.EFXG_02655	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1450214_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1450214_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1450214_15	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1450214_16	PHROG	phrog_78	tail terminator	connector
UHGV-1450214_16	UniRef90	UniRef90_A0A366U5N9	NA	NA
UHGV-1450214_16	eggNOG-mapper	565664.EFXG_02656	NA	NA
UHGV-1450214_16	Structural annotation	PF20765	NA	NA
UHGV-1450214_17	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-1450214_17	UniRef90	UniRef90_A0A2K8TFW3	Phage head-tail joining protein	NA
UHGV-1450214_17	eggNOG-mapper	565664.EFXG_02657	Phage head-tail joining protein	NA
UHGV-1450214_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1450214_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1450214_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1450214_18	PHROG	phrog_4609	NA	unknown function
UHGV-1450214_18	UniRef90	UniRef90_A0A1S8KT60	Phage gp6-like head-tail connector protein	NA
UHGV-1450214_18	eggNOG-mapper	565664.EFXG_02658	Phage gp6-like head-tail connector protein	NA
UHGV-1450214_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1450214_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1450214_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1450214_19	UniRef90	UniRef90_A0A059N399	Phage major capsid protein, HK97 family	NA
UHGV-1450214_19	eggNOG-mapper	1201292.DR75_1638	Phage capsid family	NA
UHGV-1450214_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1450214_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1450214_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1450214_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1450214_20	KOfam	K06904	NA	NA
UHGV-1450214_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1450214_20	UniRef90	UniRef90_A0A377KN37	Phage prohead protease, HK97 family	NA
UHGV-1450214_20	eggNOG-mapper	1201292.DR75_1639	Caudovirus prohead serine protease	NA
UHGV-1450214_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1450214_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1450214_20	COG	COG3740	Phage head maturation protease	NA
UHGV-1450214_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1450214_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1450214_21	UniRef90	UniRef90_A0A377KN49	Phage portal protein	NA
UHGV-1450214_21	eggNOG-mapper	565664.EFXG_02661	Phage portal protein	NA
UHGV-1450214_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1450214_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1450214_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1450214_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1450214_22	UniRef90	UniRef90_A0A132P9B0	Terminase	NA
UHGV-1450214_22	eggNOG-mapper	565664.EFXG_02662	Phage Terminase	NA
UHGV-1450214_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1450214_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1450214_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1450214_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1450214_23	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1450214_23	UniRef90	UniRef90_A0A2K8TFV2	Terminase small subunit	NA
UHGV-1450214_23	eggNOG-mapper	565664.EFXG_02663	NA	NA
UHGV-1450214_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1450214_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1450214_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1450214_24	UniRef90	UniRef90_A0A2K8TFR7	Endonuclease	NA
UHGV-1450214_24	eggNOG-mapper	565664.EFXG_02664	HNH endonuclease	NA
UHGV-1450214_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1450214_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1450214_24	Structural annotation	PF05766	NA	NA
UHGV-1450214_25	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-1450214_25	UniRef90	UniRef90_UPI000CF30667	Rho termination factor N-terminal domain-containing protein	NA
UHGV-1450214_25	eggNOG-mapper	1158604.I591_00522	NA	NA
UHGV-1450214_25	Structural annotation	PF09124	NA	NA
UHGV-1450214_26	PHROG	phrog_5859	NA	unknown function
UHGV-1450214_26	eggNOG-mapper	565664.EFXG_02666	NA	NA
UHGV-1450214_27	PHROG	phrog_9211	NA	unknown function
UHGV-1450214_27	UniRef90	UniRef90_C9B4J9	NA	NA
UHGV-1450214_27	eggNOG-mapper	1340434.AXVA01000002_gene1293	NA	NA
UHGV-1450214_27	Pfam	PF08980	NA	DUF1883
UHGV-1450214_29	PHROG	phrog_2211	NA	unknown function
UHGV-1450214_29	eggNOG-mapper	1499968.TCA2_3279	NA	NA
UHGV-1450214_30	PHROG	phrog_3882	NA	unknown function
UHGV-1450214_31	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1450214_31	UniRef90	UniRef90_I6T7S9	ArpU family transcriptional regulator	NA
UHGV-1450214_31	eggNOG-mapper	768486.EHR_09840	NA	NA
UHGV-1450214_31	Structural annotation	PF04545, TIGR01637, COG1342	NA	NA
UHGV-1450214_32	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1450214_32	UniRef90	UniRef90_A0A132PAL7	Transcriptional regulator	NA
UHGV-1450214_32	eggNOG-mapper	768486.EHR_00690	NA	NA
UHGV-1450214_32	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1450214_32	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-1450214_33	PHROG	phrog_3302	NA	unknown function
UHGV-1450214_33	UniRef90	UniRef90_A0A133CKL3	ArpT protein	NA
UHGV-1450214_33	eggNOG-mapper	565664.EFXG_02845	NA	NA