UHGV-1450218

Genome information

Genome length 24,929 bps

CDS count 33

Completeness 60.46% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1450218
vOTU ID	vOTU-035264
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0181686
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.66
Jumbo phage	No

Genome content
Genome length	24,929 bps
GC content	42.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.82%
Average CDS length	712.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1450218_1	PHROG	phrog_23549	NA	unknown function
UHGV-1450218_1	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-1450218_2	PHROG	phrog_27248	NA	unknown function
UHGV-1450218_3	PHROG	phrog_290	minor tail protein	tail
UHGV-1450218_3	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-1450218_3	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-1450218_3	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-1450218_3	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-1450218_4	PHROG	phrog_17431	NA	unknown function
UHGV-1450218_4	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-1450218_4	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1450218_5	PHROG	phrog_222	tail protein	tail
UHGV-1450218_5	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-1450218_5	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-1450218_5	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-1450218_6	PHROG	phrog_27032	NA	unknown function
UHGV-1450218_6	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-1450218_7	PHROG	phrog_122	head decoration	head and packaging
UHGV-1450218_7	UniRef90	UniRef90_B8F4K6	Putative RecA/RadA recombinase	NA
UHGV-1450218_7	eggNOG-mapper	1095743.HMPREF1054_1768	NA	NA
UHGV-1450218_7	Pfam	PF09956	NA	DUF2190
UHGV-1450218_7	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-1450218_7	Structural annotation	PF09956, COG5471	NA	NA
UHGV-1450218_8	KOfam	K06904	NA	NA
UHGV-1450218_8	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-1450218_8	UniRef90	UniRef90_F5KZM9	Caudovirus prohead protease	NA
UHGV-1450218_8	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-1450218_8	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1450218_8	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1450218_8	COG	COG3087	Cell division protein FtsN	NA
UHGV-1450218_8	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-1450218_9	PHROG	phrog_21	portal protein	head and packaging
UHGV-1450218_9	UniRef90	UniRef90_F5KZM8	Phage portal protein, lambda family	NA
UHGV-1450218_9	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-1450218_9	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-1450218_9	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-1450218_9	COG	COG5511	Phage capsid protein	NA
UHGV-1450218_9	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-1450218_10	PHROG	phrog_20307	NA	unknown function
UHGV-1450218_10	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-1450218_10	Structural annotation	PF19645, COG1382	NA	NA
UHGV-1450218_11	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-1450218_11	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-1450218_11	UniRef90	UniRef90_E1LBM6	Phage terminase large subunit (GpA)	NA
UHGV-1450218_11	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-1450218_11	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-1450218_11	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-1450218_11	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-1450218_11	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-1450218_11	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-1450218_12	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-1450218_12	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-1450218_12	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-1450218_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1450218_13	UniRef90	UniRef90_UPI0013DFE289	NA	NA
UHGV-1450218_13	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-1450218_13	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1450218_14	PHROG	phrog_236	nucleotide kinase	other
UHGV-1450218_14	UniRef90	UniRef90_UPI001D0A2658	NA	NA
UHGV-1450218_14	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-1450218_14	Pfam	PF11753	NA	DUF3310
UHGV-1450218_14	Structural annotation	PF11753	NA	NA
UHGV-1450218_15	PHROG	phrog_918	NA	unknown function
UHGV-1450218_15	eggNOG-mapper	1401067.HMPREF0872_03440	NA	NA
UHGV-1450218_15	Pfam	PF19791	NA	DUF6275
UHGV-1450218_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1450218_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1450218_16	UniRef90	UniRef90_A0A6N2ZEW6	Helicase ATP-binding domain-containing protein	NA
UHGV-1450218_16	eggNOG-mapper	546273.VEIDISOL_00706	SNF2 family	NA
UHGV-1450218_16	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1450218_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1450218_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1450218_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1450218_16	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1450218_17	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1450218_17	UniRef90	UniRef90_A0A413EEJ0	VRR-NUC domain-containing protein	NA
UHGV-1450218_17	eggNOG-mapper	546273.VEIDISOL_00705	VRR_NUC	NA
UHGV-1450218_17	Structural annotation	PF01870, MF_01490, NF041423, COG1591	NA	NA
UHGV-1450218_18	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1450218_18	UniRef90	UniRef90_C4FP80	Virulence-associated protein E	NA
UHGV-1450218_18	eggNOG-mapper	546273.VEIDISOL_00704	Virulence-associated protein E	NA
UHGV-1450218_18	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1450218_18	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1450218_18	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-1450218_19	PHROG	phrog_16315	NA	unknown function
UHGV-1450218_19	UniRef90	UniRef90_UPI000F8DF173	PcfJ domain-containing protein	NA
UHGV-1450218_19	eggNOG-mapper	546273.VEIDISOL_00703	PcfJ-like protein	NA
UHGV-1450218_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1450218_19	Structural annotation	PF14284	NA	NA
UHGV-1450218_21	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1450218_21	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1450218_21	UniRef90	UniRef90_A0A3A6W420	POLAc domain-containing protein	NA
UHGV-1450218_21	eggNOG-mapper	546273.VEIDISOL_00701	DNA polymerase	NA
UHGV-1450218_21	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1450218_21	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1450218_21	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1450218_22	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1450218_22	UniRef90	UniRef90_UPI001F0CBF89	NA	NA
UHGV-1450218_22	eggNOG-mapper	546273.VEIDISOL_00700	NA	NA
UHGV-1450218_22	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1450218_22	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1450218_24	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1450218_24	UniRef90	UniRef90_UPI000F8EBC86	NA	NA
UHGV-1450218_24	eggNOG-mapper	546273.VEIDISOL_00698	NA	NA
UHGV-1450218_24	Pfam	PF10926	NA	DUF2800
UHGV-1450218_24	COG	COG2887	RecB family exonuclease	NA
UHGV-1450218_24	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1450218_27	PHROG	phrog_30876	NA	unknown function
UHGV-1450218_27	UniRef90	UniRef90_F5KZK9	Conserved domain protein	NA
UHGV-1450218_28	PHROG	phrog_29542	NA	unknown function
UHGV-1450218_30	PHROG	phrog_6058	NA	unknown function
UHGV-1450218_30	Structural annotation	PF09035, NF033787	NA	NA
UHGV-1450218_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1450218_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1450218_31	UniRef90	UniRef90_UPI000989B3E6	helix-turn-helix domain-containing protein	NA
UHGV-1450218_31	eggNOG-mapper	1403946.Q615_SPAC00127G0164	Helix-turn-helix XRE-family like proteins	NA
UHGV-1450218_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1450218_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1450218_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1450218_32	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1450218_32	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1450218_32	UniRef90	UniRef90_UPI001D061FDD	XRE family transcriptional regulator	NA
UHGV-1450218_32	eggNOG-mapper	1000569.HMPREF1040_0380	Peptidase S24-like	NA
UHGV-1450218_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1450218_32	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1450218_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1450218_32	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA