UHGV-1451439

Genome information

Genome length 27,975 bps

CDS count 51

Completeness 69.33% (medium-quality)

geNomad score 0.9572

Prediction confidence Confident

Genome information
Genome ID	UHGV-1451439
vOTU ID	vOTU-029882
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0200007
BioSample	SAMEA2737772
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9572
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.94
Jumbo phage	No

Genome content
Genome length	27,975 bps
GC content	53.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	88.78%
Average CDS length	490.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1451439_2	PHROG	phrog_240	head protein	head and packaging
UHGV-1451439_2	UniRef90	UniRef90_A0A1Y0T1T3	Putative minor tail protein	NA
UHGV-1451439_2	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-1451439_2	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-1451439_3	PHROG	phrog_2941	virion structural protein	head and packaging
UHGV-1451439_3	eggNOG-mapper	288000.BBta_5781	NA	NA
UHGV-1451439_3	Structural annotation	PF20387	NA	NA
UHGV-1451439_5	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1451439_5	UniRef90	UniRef90_UPI00097D27EC	NA	NA
UHGV-1451439_5	eggNOG-mapper	1380394.JADL01000008_gene3764	NA	NA
UHGV-1451439_5	Pfam	PF17236	NA	DUF5309
UHGV-1451439_5	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-1451439_6	PHROG	phrog_3927	head scaffolding protein	head and packaging
UHGV-1451439_8	PHROG	phrog_1216	portal protein	head and packaging
UHGV-1451439_8	UniRef90	UniRef90_A0A218MLX1	Putative portal protein	NA
UHGV-1451439_8	eggNOG-mapper	1380394.JADL01000008_gene3768	Membrane	NA
UHGV-1451439_8	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1451439_8	Structural annotation	PF12236, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1451439_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1451439_9	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1451439_9	UniRef90	UniRef90_A0A6B3UE32	PBSX family phage terminase large subunit	NA
UHGV-1451439_9	eggNOG-mapper	864069.MicloDRAFT_00064680	terminase, large subunit	NA
UHGV-1451439_9	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1451439_9	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1451439_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-1451439_9	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1451439_10	PHROG	phrog_2412	NA	unknown function
UHGV-1451439_10	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-1451439_10	eggNOG-mapper	665942.HMPREF1022_00138	NA	NA
UHGV-1451439_11	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-1451439_13	eggNOG-mapper	457398.HMPREF0326_01528	NA	NA
UHGV-1451439_14	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1451439_14	PHROG	phrog_894	endolysin	lysis
UHGV-1451439_14	UniRef90	UniRef90_S2KWS0	Peptidase_M15_3 domain-containing protein	NA
UHGV-1451439_14	eggNOG-mapper	563192.HMPREF0179_05258	Peptidase M15	NA
UHGV-1451439_14	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1451439_14	COG	COG3108	NA	NA
UHGV-1451439_14	Structural annotation	PF05951, COG3108	NA	NA
UHGV-1451439_16	eggNOG-mapper	457398.HMPREF0326_03024	NA	NA
UHGV-1451439_18	PHROG	phrog_16304	NA	unknown function
UHGV-1451439_18	UniRef90	UniRef90_A0A6N7W5E3	NA	NA
UHGV-1451439_18	eggNOG-mapper	883.DvMF_1672	NA	NA
UHGV-1451439_18	Pfam	PF19808	NA	DUF6291
UHGV-1451439_18	Structural annotation	PF19808	NA	NA
UHGV-1451439_19	Structural annotation	PF10013, COG4338	NA	NA
UHGV-1451439_20	eggNOG-mapper	1408428.JNJP01000012_gene1098	NA	NA
UHGV-1451439_20	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-1451439_20	Structural annotation	PF06892, NF041471, COG3655	NA	NA
UHGV-1451439_21	UniRef90	UniRef90_UPI0012DFC365	helix-turn-helix domain-containing protein	NA
UHGV-1451439_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1451439_22	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1451439_22	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1451439_22	UniRef90	UniRef90_E5Y6E7	Peptidase_S24 domain-containing protein	NA
UHGV-1451439_22	eggNOG-mapper	563192.HMPREF0179_01760	sequence-specific DNA binding	NA
UHGV-1451439_22	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1451439_22	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1451439_22	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-1451439_28	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1451439_28	eggNOG-mapper	563192.HMPREF0179_02918	HNH nucleases	NA
UHGV-1451439_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1451439_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1451439_29	PHROG	phrog_20532	NA	unknown function
UHGV-1451439_29	eggNOG-mapper	1232443.BAIA02000066_gene981	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1451439_29	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1451439_30	PHROG	phrog_10048	NA	unknown function
UHGV-1451439_30	eggNOG-mapper	1121448.DGI_2004	NA	NA
UHGV-1451439_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1451439_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1451439_31	UniRef90	UniRef90_E5Y6K0	Single-stranded DNA-binding protein	NA
UHGV-1451439_31	eggNOG-mapper	1408428.JNJP01000007_gene1895	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1451439_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1451439_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1451439_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1451439_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1451439_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1451439_32	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1451439_32	UniRef90	UniRef90_UPI001AD80219	siphovirus Gp157 family protein	NA
UHGV-1451439_32	eggNOG-mapper	665942.HMPREF1022_00116	PFAM Gp157 family protein	NA
UHGV-1451439_32	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1451439_32	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1451439_33	eggNOG-mapper	563192.HMPREF0179_02915	NA	NA
UHGV-1451439_34	eggNOG-mapper	563192.HMPREF0179_02914	NA	NA
UHGV-1451439_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1451439_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1451439_38	UniRef90	UniRef90_UPI001D0A697E	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1451439_38	eggNOG-mapper	1123376.AUIU01000017_gene135	sulfate reduction	NA
UHGV-1451439_38	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1451439_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1451439_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1451439_38	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1451439_41	eggNOG-mapper	563192.HMPREF0179_02908	NA	NA
UHGV-1451439_43	KOfam	K14059	int; integrase	NA
UHGV-1451439_43	PHROG	phrog_1	integrase	integration and excision
UHGV-1451439_43	UniRef90	UniRef90_UPI001D0A28F9	tyrosine-type recombinase/integrase	NA
UHGV-1451439_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1451439_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1451439_43	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1451439_48	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1451439_49	PHROG	phrog_2618	NA	unknown function
UHGV-1451439_49	eggNOG-mapper	1408428.JNJP01000030_gene953	NA	NA
UHGV-1451439_50	eggNOG-mapper	563192.HMPREF0179_01733	NA	NA
UHGV-1451439_50	COG	COG5563	NA	NA
UHGV-1451439_51	eggNOG-mapper	1408428.JNJP01000003_gene3538	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1451439_51	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-1451439_51	COG	COG5301	Phage-related tail fiber protein	NA