UHGV-1451552

Genome information

Genome length 28,120 bps

CDS count 51

Completeness 61.86% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-1451552
vOTU ID	vOTU-035300
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0200876
BioSample	SAMN02333944
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.6
Jumbo phage	No

Genome content
Genome length	28,120 bps
GC content	39.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	88.25%
Average CDS length	492.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1451552_2	PHROG	phrog_22984	NA	unknown function
UHGV-1451552_3	PHROG	phrog_21718	NA	unknown function
UHGV-1451552_3	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1451552_4	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-1451552_4	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-1451552_5	PHROG	phrog_3754	NA	unknown function
UHGV-1451552_5	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1451552_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1451552_6	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-1451552_6	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-1451552_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1451552_6	COG	COG2369	NA	NA
UHGV-1451552_6	Structural annotation	PF06152	NA	NA
UHGV-1451552_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-1451552_7	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-1451552_7	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1451552_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1451552_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1451552_9	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1451552_9	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-1451552_9	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1451552_9	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1451552_9	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1451552_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-1451552_9	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1451552_10	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1451552_10	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-1451552_10	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1451552_10	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1451552_10	Structural annotation	PF16677	NA	NA
UHGV-1451552_11	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-1451552_11	AcrCatalog	cluster_11670	NA	NA
UHGV-1451552_13	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1451552_13	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-1451552_13	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-1451552_13	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1451552_13	Structural annotation	PF12643, NF001613, COG0140	NA	NA
UHGV-1451552_15	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-1451552_17	PHROG	phrog_20593	NA	unknown function
UHGV-1451552_18	PHROG	phrog_22740	NA	unknown function
UHGV-1451552_18	UniRef90	UniRef90_A0A2X2UEM9	DNA N-6-adenine-methyltransferase of bacteriophage	NA
UHGV-1451552_18	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-1451552_18	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1451552_18	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1451552_19	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-1451552_19	AcrCatalog	cluster_11670	NA	NA
UHGV-1451552_20	PHROG	phrog_4601	NA	unknown function
UHGV-1451552_21	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1451552_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1451552_21	UniRef90	UniRef90_A0A317UED7	Restriction alleviation protein, Lar family	NA
UHGV-1451552_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1451552_21	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1451552_21	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1451552_23	UniRef90	UniRef90_A0A373P4I4	Winged helix-turn-helix transcriptional regulator	NA
UHGV-1451552_23	Pfam	PF12840	Helix-turn-helix domain	HTH_20
UHGV-1451552_23	Structural annotation	PF01726, COG0640	NA	NA
UHGV-1451552_24	PHROG	phrog_17690	NA	unknown function
UHGV-1451552_24	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-1451552_26	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-1451552_26	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-1451552_26	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-1451552_26	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-1451552_26	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-1451552_26	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-1451552_26	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1451552_26	Structural annotation	PF05970, PF16277, MF_03176, TIGR01448, COG0507	NA	NA
UHGV-1451552_27	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1451552_27	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-1451552_27	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-1451552_27	Pfam	PF06048	NA	DUF927
UHGV-1451552_27	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1451552_27	COG	COG5519	NA	NA
UHGV-1451552_27	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1451552_28	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1451552_28	PHROG	phrog_11992	NA	unknown function
UHGV-1451552_28	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-1451552_28	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-1451552_28	PADLOC	drt-UG29	DRT	DRT
UHGV-1451552_28	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1451552_28	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1451552_28	Structural annotation	PF01807, PF00401	NA	NA
UHGV-1451552_29	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1451552_29	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-1451552_29	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-1451552_29	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1451552_29	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1451552_30	PHROG	phrog_28936	NA	unknown function
UHGV-1451552_30	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-1451552_30	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-1451552_31	PHROG	phrog_18107	NA	unknown function
UHGV-1451552_31	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-1451552_31	Structural annotation	PF05037	NA	NA
UHGV-1451552_32	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1451552_32	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-1451552_32	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-1451552_32	Pfam	PF13479	AAA domain	AAA_24
UHGV-1451552_32	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1451552_33	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-1451552_34	Structural annotation	NF011879	NA	NA
UHGV-1451552_40	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-1451552_42	Structural annotation	PF13601, TIGR04176	NA	NA
UHGV-1451552_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1451552_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1451552_46	UniRef90	UniRef90_UPI001C01C52A	helix-turn-helix domain-containing protein	NA
UHGV-1451552_46	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-1451552_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1451552_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1451552_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1451552_48	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1451552_48	UniRef90	UniRef90_A0A839JXV0	Ig domain-containing protein	NA
UHGV-1451552_48	eggNOG-mapper	1410624.JNKK01000014_gene1631	Bacterial Ig-like domain (group 2)	NA
UHGV-1451552_48	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1451552_48	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-1451552_48	Structural annotation	PF02368, PF11906, NF005261	NA	NA
UHGV-1451552_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1451552_49	PHROG	phrog_95	integrase	integration and excision
UHGV-1451552_49	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-1451552_49	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-1451552_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1451552_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-1451552_49	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1451552_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1451552_49	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1451552_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1451552_50	PHROG	phrog_3088	amidase	lysis
UHGV-1451552_50	UniRef90	UniRef90_A0A6L8THF2	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1451552_50	eggNOG-mapper	457412.RSAG_02159	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1451552_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1451552_50	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1451552_50	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1451552_50	Structural annotation	PF01510, PF08230, NF008758, COG5632	NA	NA
UHGV-1451552_51	PHROG	phrog_28673	tail protein	tail
UHGV-1451552_51	UniRef90	UniRef90_UPI001EE6A434	SGNH/GDSL hydrolase family protein	NA
UHGV-1451552_51	eggNOG-mapper	1211112.ALJC01000006_gene15	NA	NA