UHGV-1451800

Genome information

vOTU vOTU-071993

Genome length 44,613 bps

CDS count 74

Completeness 99.26% (high-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-1451800
vOTU ID	vOTU-071993
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0291453
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.44
Jumbo phage	No

Genome content
Genome length	44,613 bps
GC content	33.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	88.18%
Average CDS length	534.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1451800_1	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-1451800_1	UniRef90	UniRef90_A0A395WEU5	Antirestriction protein ArdA	NA
UHGV-1451800_1	eggNOG-mapper	511680.BUTYVIB_00697	NA	NA
UHGV-1451800_1	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-1451800_1	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-1451800_2	UniRef90	UniRef90_A0A395WDY7	HTH_8 domain-containing protein	NA
UHGV-1451800_2	eggNOG-mapper	1145276.T479_12115	Helix-turn-helix domain	NA
UHGV-1451800_2	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-1451800_3	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1451800_3	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-1451800_3	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-1451800_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1451800_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1451800_4	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1451800_4	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-1451800_4	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-1451800_4	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1451800_4	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1451800_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1451800_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1451800_5	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-1451800_5	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-1451800_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1451800_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1451800_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1451800_5	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1451800_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-1451800_6	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-1451800_6	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-1451800_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1451800_6	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1451800_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1451800_7	KOfam	K06904	NA	NA
UHGV-1451800_7	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1451800_7	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-1451800_7	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-1451800_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1451800_7	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1451800_7	COG	COG3740	Phage head maturation protease	NA
UHGV-1451800_7	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1451800_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-1451800_8	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-1451800_8	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-1451800_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1451800_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1451800_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1451800_8	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1451800_9	PHROG	phrog_5223	neck protein	connector
UHGV-1451800_9	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-1451800_9	Structural annotation	TIGR01560	NA	NA
UHGV-1451800_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1451800_10	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-1451800_10	eggNOG-mapper	588581.Cpap_1270	NA	NA
UHGV-1451800_10	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1451800_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1451800_11	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1451800_12	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-1451800_12	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-1451800_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1451800_13	PHROG	phrog_88	major tail protein	tail
UHGV-1451800_13	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-1451800_13	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-1451800_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1451800_13	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1451800_14	Structural annotation	PF11836	NA	NA
UHGV-1451800_16	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1451800_16	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1451800_16	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-1451800_16	eggNOG-mapper	642492.Clole_0830	Phage tail tape measure protein, TP901 family	NA
UHGV-1451800_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1451800_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1451800_16	COG	COG5283	Phage-related tail protein	NA
UHGV-1451800_16	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-1451800_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1451800_17	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-1451800_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1451800_17	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1451800_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-1451800_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1451800_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1451800_18	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1451800_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1451800_18	COG	COG4926	Phage-related protein	NA
UHGV-1451800_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1451800_19	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-1451800_19	Structural annotation	PF10651, COG5513	NA	NA
UHGV-1451800_20	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-1451800_21	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-1451800_22	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-1451800_23	PHROG	phrog_19280	NA	unknown function
UHGV-1451800_23	UniRef90	UniRef90_A0A413UF00	NA	NA
UHGV-1451800_23	Pfam	PF19789	NA	DUF6273
UHGV-1451800_23	Structural annotation	PF19789	NA	NA
UHGV-1451800_26	PHROG	phrog_4492	tail fiber protein	tail
UHGV-1451800_26	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-1451800_26	Structural annotation	PF03425, NF033675	NA	NA
UHGV-1451800_27	PHROG	phrog_24451	NA	unknown function
UHGV-1451800_27	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-1451800_32	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-1451800_32	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-1451800_33	PHROG	phrog_20016	NA	unknown function
UHGV-1451800_33	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-1451800_33	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1451800_33	Pfam	PF18573	BclA C-terminal domain	BclA_C
UHGV-1451800_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1451800_35	PHROG	phrog_443	holin	lysis
UHGV-1451800_35	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-1451800_35	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-1451800_35	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1451800_35	Structural annotation	PF16945	NA	NA
UHGV-1451800_37	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1451800_37	PHROG	phrog_7698	endolysin	lysis
UHGV-1451800_37	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1451800_37	eggNOG-mapper	1125712.HMPREF1316_2631	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1451800_37	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1451800_37	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1451800_37	Structural annotation	COG5632	NA	NA
UHGV-1451800_38	KOfam	K14059	int; integrase	NA
UHGV-1451800_38	PHROG	phrog_1	integrase	integration and excision
UHGV-1451800_38	UniRef90	UniRef90_A0A395WBW7	Site-specific integrase	NA
UHGV-1451800_38	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-1451800_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1451800_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1451800_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1451800_39	UniRef90	UniRef90_A0A413CSC4	PBECR3 domain-containing protein	NA
UHGV-1451800_39	eggNOG-mapper	796940.HMPREF9628_02206	NA	NA
UHGV-1451800_39	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-1451800_39	Structural annotation	PF18812, COG2929	NA	NA
UHGV-1451800_41	KOfam	K07172	mazE, chpAI; antitoxin MazE	NA
UHGV-1451800_41	PHROG	phrog_4324	NA	unknown function
UHGV-1451800_41	UniRef90	UniRef90_A0A6N7V4Q9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-1451800_41	eggNOG-mapper	1122173.AXVL01000008_gene1112	PFAM SpoVT AbrB	NA
UHGV-1451800_41	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-1451800_41	COG	COG2336	Antitoxin component MazE of the MazEF toxin-antitoxin module	NA
UHGV-1451800_41	Structural annotation	PF04014, MF_01193, NF008463, COG2336	NA	NA
UHGV-1451800_42	KOfam	K18841	chpB, chpBK; mRNA interferase ChpB [EC:3.1.-.-]	NA
UHGV-1451800_42	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1451800_42	UniRef90	UniRef90_A0A6N7VH90	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-1451800_42	eggNOG-mapper	457405.FSDG_01637	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1451800_42	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1451800_42	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1451800_42	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1451800_43	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1451800_43	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1451800_43	UniRef90	UniRef90_A0A413CSI3	XRE family transcriptional regulator	NA
UHGV-1451800_43	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-1451800_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1451800_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1451800_43	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-1451800_45	UniRef90	UniRef90_UPI000E4DF961	ribbon-helix-helix domain-containing protein	NA
UHGV-1451800_45	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1451800_45	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1451800_48	UniRef90	UniRef90_UPI001D14AAA4	NA	NA
UHGV-1451800_51	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1451800_51	PHROG	phrog_1	integrase	integration and excision
UHGV-1451800_51	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-1451800_51	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-1451800_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1451800_51	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1451800_51	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1451800_55	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1451800_55	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-1451800_55	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1451800_55	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1451800_55	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1451800_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1451800_55	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-1451800_56	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1451800_56	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1451800_56	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-1451800_56	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-1451800_56	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1451800_56	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1451800_56	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1451800_59	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-1451800_59	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-1451800_59	eggNOG-mapper	1174504.AJTN02000191_gene4276	dUTPase	NA
UHGV-1451800_59	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-1451800_59	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-1451800_59	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1451800_64	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-1451800_64	Structural annotation	PF07374, NF008895	NA	NA
UHGV-1451800_65	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1451800_65	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-1451800_65	eggNOG-mapper	272623.L62008	NA	NA
UHGV-1451800_66	PHROG	phrog_2316	NA	unknown function
UHGV-1451800_66	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-1451800_66	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-1451800_66	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-1451800_67	PHROG	phrog_88	major tail protein	tail
UHGV-1451800_67	eggNOG-mapper	596315.HMPREF0634_0225	phage major tail protein, phi13 family	NA
UHGV-1451800_67	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1451800_70	eggNOG-mapper	1403948.Q618_VCMC00003G0140	NA	NA
UHGV-1451800_74	eggNOG-mapper	1121101.HMPREF1532_00480	antirestriction protein	NA
UHGV-1451800_74	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-1451800_74	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-1451800_74	COG	COG4734	Antirestriction protein ArdA	NA