UHGV-1452037

Genome information

vOTU vOTU-020614

Genome length 38,730 bps

CDS count 49

Completeness 70.06% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-1452037
vOTU ID	vOTU-020614
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0261575
BioSample	SAMEA2338854
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.43
Jumbo phage	No

Genome content
Genome length	38,730 bps
GC content	33.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.64%
Average CDS length	734.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1452037_1	PHROG	phrog_38135	NA	unknown function
UHGV-1452037_1	UniRef90	UniRef90_A0A414AEF7	NA	NA
UHGV-1452037_1	eggNOG-mapper	742723.HMPREF9477_00941	dextransucrase activity	NA
UHGV-1452037_1	Pfam	PF14020	NA	DUF4236
UHGV-1452037_1	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-1452037_1	Structural annotation	PF14020	NA	NA
UHGV-1452037_2	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-1452037_2	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1452037_2	UniRef90	UniRef90_A0A1Y3REY4	Endonuclease	NA
UHGV-1452037_2	eggNOG-mapper	742738.HMPREF9460_04035	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-1452037_2	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-1452037_2	COG	COG4748	NA	NA
UHGV-1452037_2	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-1452037_3	PHROG	phrog_1914	NA	unknown function
UHGV-1452037_3	UniRef90	UniRef90_A0A3D4VT22	Peptidase_M78 domain-containing protein	NA
UHGV-1452037_3	eggNOG-mapper	445971.ANASTE_00176	IrrE N-terminal-like domain	NA
UHGV-1452037_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1452037_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1452037_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1452037_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1452037_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1452037_4	UniRef90	UniRef90_UPI0018F8A818	helix-turn-helix domain-containing protein	NA
UHGV-1452037_4	eggNOG-mapper	903814.ELI_0076	Helix-turn-helix XRE-family like proteins	NA
UHGV-1452037_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1452037_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1452037_4	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-1452037_5	UniRef90	UniRef90_A0A417IT45	NA	NA
UHGV-1452037_5	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-1452037_5	Pfam	PF05339	NA	DUF739
UHGV-1452037_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1452037_5	Structural annotation	PF05339, NF041575, COG3655	NA	NA
UHGV-1452037_6	UniRef90	UniRef90_R5VJE7	DNA binding domain excisionase family protein	NA
UHGV-1452037_6	eggNOG-mapper	1415774.U728_1714	Helix-turn-helix domain	NA
UHGV-1452037_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1452037_7	Structural annotation	NF040595	NA	NA
UHGV-1452037_9	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1452037_9	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1452037_9	UniRef90	UniRef90_A0A7W8MWI1	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1452037_9	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-1452037_9	Pfam	PF13476	AAA domain	AAA_23
UHGV-1452037_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1452037_9	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1452037_10	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1452037_10	UniRef90	UniRef90_UPI001F3F277E	recombinase RecT	NA
UHGV-1452037_10	eggNOG-mapper	1415774.U728_869	NA	NA
UHGV-1452037_11	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1452037_11	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1452037_11	UniRef90	UniRef90_A0A6P1YA67	MBL fold metallo-hydrolase	NA
UHGV-1452037_11	eggNOG-mapper	457424.BFAG_02390	Metallo-beta-lactamase superfamily	NA
UHGV-1452037_11	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1452037_11	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1452037_11	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1452037_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1452037_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1452037_12	UniRef90	UniRef90_R6PGX1	Single-stranded DNA-binding protein	NA
UHGV-1452037_12	eggNOG-mapper	1280680.AUJU01000003_gene3256	Single-strand binding protein family	NA
UHGV-1452037_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1452037_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1452037_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1452037_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1452037_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1452037_13	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1452037_13	eggNOG-mapper	1158602.I590_00669	Replication initiation and membrane attachment	NA
UHGV-1452037_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1452037_13	Structural annotation	PF19481, PF04492, TIGR01610, COG5529	NA	NA
UHGV-1452037_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1452037_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1452037_14	UniRef90	UniRef90_A0A0U3FEM1	Endodeoxyribonuclease RusA family protein	NA
UHGV-1452037_14	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-1452037_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1452037_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1452037_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1452037_16	PHROG	phrog_236	nucleotide kinase	other
UHGV-1452037_16	UniRef90	UniRef90_UPI001897331D	NA	NA
UHGV-1452037_16	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-1452037_16	Pfam	PF11753	NA	DUF3310
UHGV-1452037_16	Structural annotation	PF11753	NA	NA
UHGV-1452037_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1452037_18	UniRef90	UniRef90_UPI000368796A	NA	NA
UHGV-1452037_18	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-1452037_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1452037_18	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1452037_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1452037_19	UniRef90	UniRef90_A0A7X5CDW9	Helix-turn-helix domain-containing protein	NA
UHGV-1452037_19	eggNOG-mapper	1121091.AUMP01000003_gene2580	transposase activity	NA
UHGV-1452037_19	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1452037_19	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1452037_19	Structural annotation	PF07141	NA	NA
UHGV-1452037_20	UniRef90	UniRef90_UPI0002554C4F	type II toxin-antitoxin system HicA family toxin	NA
UHGV-1452037_20	eggNOG-mapper	243275.TDE_0482	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1452037_20	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1452037_20	Structural annotation	COG1724	NA	NA
UHGV-1452037_21	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1452037_21	PHROG	phrog_33232	NA	unknown function
UHGV-1452037_21	UniRef90	UniRef90_A0A3A9AIT5	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-1452037_21	eggNOG-mapper	97138.C820_00752	HicB family	NA
UHGV-1452037_21	Pfam	PF21748	UPF0150-like	UPF0150
UHGV-1452037_21	Pfam	PF05534	HicB family	HicB
UHGV-1452037_21	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1452037_21	Structural annotation	PF15919, COG1598, COG4691	NA	NA
UHGV-1452037_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1452037_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1452037_22	UniRef90	UniRef90_U1Y2Q1	Phage terminase, large subunit, PBSX family	NA
UHGV-1452037_22	eggNOG-mapper	649747.HMPREF0083_05319	Terminase RNAseH like domain	NA
UHGV-1452037_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1452037_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1452037_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1452037_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1452037_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1452037_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-1452037_23	UniRef90	UniRef90_UPI00164E78B1	phage portal protein	NA
UHGV-1452037_23	eggNOG-mapper	887325.HMPREF0381_0085	Phage portal protein, SPP1 family	NA
UHGV-1452037_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1452037_23	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1452037_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1452037_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1452037_24	eggNOG-mapper	887325.HMPREF0381_0084	Phage Mu protein F like protein	NA
UHGV-1452037_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1452037_24	COG	COG2369	NA	NA
UHGV-1452037_25	eggNOG-mapper	754027.HMPREF9554_00527	NA	NA
UHGV-1452037_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1452037_27	UniRef90	UniRef90_UPI00164E8D40	SHOCT domain-containing protein	NA
UHGV-1452037_27	eggNOG-mapper	1118063.I7IDF4_9CAUD	aminoacyl-tRNA ligase activity	NA
UHGV-1452037_27	Pfam	PF14265	NA	DUF4355
UHGV-1452037_27	Structural annotation	PF14265	NA	NA
UHGV-1452037_28	PHROG	phrog_909	major head protein	head and packaging
UHGV-1452037_29	PHROG	phrog_29	major head protein	head and packaging
UHGV-1452037_29	UniRef90	UniRef90_R7H6N6	Phage major capsid protein E	NA
UHGV-1452037_29	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-1452037_29	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1452037_29	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1452037_32	PHROG	phrog_222	tail protein	tail
UHGV-1452037_32	UniRef90	UniRef90_A0A6G9L6L4	Tail completion protein	NA
UHGV-1452037_32	eggNOG-mapper	1121091.AUMP01000032_gene3102	NA	NA
UHGV-1452037_33	PHROG	phrog_1661	NA	unknown function
UHGV-1452037_33	eggNOG-mapper	1484479.DI14_04750	NA	NA
UHGV-1452037_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1452037_34	PHROG	phrog_1232	NA	unknown function
UHGV-1452037_34	eggNOG-mapper	525919.Apre_0845	NA	NA
UHGV-1452037_34	Structural annotation	PF08873	NA	NA
UHGV-1452037_35	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1452037_35	UniRef90	UniRef90_UPI00189D3BF5	NA	NA
UHGV-1452037_35	eggNOG-mapper	1307436.PBF_04380	NA	NA
UHGV-1452037_35	Pfam	PF11863	NA	DUF3383
UHGV-1452037_35	Structural annotation	PF11863, COG4386	NA	NA
UHGV-1452037_36	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-1452037_36	UniRef90	UniRef90_A0A2K2TVV7	NA	NA
UHGV-1452037_36	eggNOG-mapper	1236976.JCM16418_801	NA	NA
UHGV-1452037_36	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-1452037_36	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-1452037_37	PHROG	phrog_1778	NA	unknown function
UHGV-1452037_37	Structural annotation	PF16462	NA	NA
UHGV-1452037_38	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-1452037_38	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-1452037_38	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1452037_38	COG	COG5412	Phage-related protein	NA
UHGV-1452037_39	PHROG	phrog_1517	endolysin	lysis
UHGV-1452037_39	UniRef90	UniRef90_A0A544TWG6	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1452037_39	eggNOG-mapper	1196323.ALKF01000191_gene5631	LysM domain	NA
UHGV-1452037_39	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1452037_39	COG	COG1388	LysM repeat	NA
UHGV-1452037_39	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-1452037_40	PHROG	phrog_1264	NA	unknown function
UHGV-1452037_40	eggNOG-mapper	1230341.MJ3_13674	NA	NA
UHGV-1452037_41	KOfam	K13694	mepS, spr; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]	NA
UHGV-1452037_41	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-1452037_41	eggNOG-mapper	887325.HMPREF0381_0069	NA	NA
UHGV-1452037_41	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1452037_42	Pfam	PF18352	NA	Gp138_N
UHGV-1452037_42	Structural annotation	PF18352	NA	NA
UHGV-1452037_43	PHROG	phrog_120	baseplate protein	tail
UHGV-1452037_43	UniRef90	UniRef90_UPI000C256A04	NA	NA
UHGV-1452037_43	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1452037_44	PHROG	phrog_6	baseplate protein	tail
UHGV-1452037_44	UniRef90	UniRef90_A0A355JCM0	Baseplate_J domain-containing protein	NA
UHGV-1452037_44	eggNOG-mapper	887325.HMPREF0381_0066	Baseplate J-like protein	NA
UHGV-1452037_44	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1452037_44	COG	COG3299	NA	NA
UHGV-1452037_44	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1452037_45	PHROG	phrog_1160	baseplate protein	tail
UHGV-1452037_45	UniRef90	UniRef90_UPI001BEA3AB8	NA	NA
UHGV-1452037_45	eggNOG-mapper	1121091.AUMP01000032_gene3116	NA	NA
UHGV-1452037_45	Pfam	PF11041	NA	DUF2612
UHGV-1452037_45	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-1452037_46	PHROG	phrog_2126	tail fiber protein	tail
UHGV-1452037_46	eggNOG-mapper	1449338.JQLU01000005_gene3784	NA	NA
UHGV-1452037_46	Pfam	PF12789	Phage tail repeat like	PTR
UHGV-1452037_46	Structural annotation	TIGR03805	NA	NA
UHGV-1452037_47	PHROG	phrog_199	holin	lysis
UHGV-1452037_47	UniRef90	UniRef90_A0A174N8Q9	Phage-related holin (Lysis protein)	NA
UHGV-1452037_47	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-1452037_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1452037_47	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1452037_47	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1452037_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1452037_48	UniRef90	UniRef90_A0A3E4LXG7	NlpC/P60 domain-containing protein	NA
UHGV-1452037_48	eggNOG-mapper	411902.CLOBOL_05642	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-1452037_48	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA