UHGV-1452311

Genome information

vOTU vOTU-020939

Genome length 28,371 bps

CDS count 42

Completeness 76.70% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-1452311
vOTU ID	vOTU-020939
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0202238
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.94
Jumbo phage	No

Genome content
Genome length	28,371 bps
GC content	37.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	90.05%
Average CDS length	613.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1452311_3	PHROG	phrog_18608	NA	unknown function
UHGV-1452311_3	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1452311_3	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1452311_4	PHROG	phrog_3558	tail protein	tail
UHGV-1452311_4	UniRef90	UniRef90_A0A415YC11	Prophage_tail domain-containing protein	NA
UHGV-1452311_4	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-1452311_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1452311_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1452311_4	COG	COG4926	Phage-related protein	NA
UHGV-1452311_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1452311_5	UniRef90	UniRef90_A0A415YBZ3	MtfA protein	NA
UHGV-1452311_5	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-1452311_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-1452311_5	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-1452311_6	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1452311_6	UniRef90	UniRef90_A0A174K285	Phage-related protein	NA
UHGV-1452311_6	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-1452311_6	COG	COG1511	NA	NA
UHGV-1452311_7	PHROG	phrog_706	NA	unknown function
UHGV-1452311_7	UniRef90	UniRef90_A0A174K5P2	Bacteriophage Gp15 protein	NA
UHGV-1452311_7	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-1452311_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1452311_7	Structural annotation	PF06854	NA	NA
UHGV-1452311_8	PHROG	phrog_4450	NA	unknown function
UHGV-1452311_8	UniRef90	UniRef90_A0A355D9Y6	AP endonuclease	NA
UHGV-1452311_8	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-1452311_8	Pfam	PF20378	NA	DUF6673
UHGV-1452311_8	Structural annotation	PF20378	NA	NA
UHGV-1452311_9	PHROG	phrog_3099	NA	unknown function
UHGV-1452311_9	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-1452311_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1452311_10	PHROG	phrog_3266	tail completion	connector
UHGV-1452311_10	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-1452311_10	Structural annotation	PF12691	NA	NA
UHGV-1452311_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1452311_11	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-1452311_11	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-1452311_11	Structural annotation	PF11114	NA	NA
UHGV-1452311_12	PHROG	phrog_3366	NA	unknown function
UHGV-1452311_12	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-1452311_12	Pfam	PF20536	NA	DUF6751
UHGV-1452311_12	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-1452311_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1452311_13	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-1452311_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-1452311_14	UniRef90	UniRef90_A0A415YC03	Phage major capsid protein	NA
UHGV-1452311_14	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-1452311_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1452311_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1452311_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1452311_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1452311_15	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1452311_15	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-1452311_15	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-1452311_16	KOfam	K07584	NA	NA
UHGV-1452311_16	PHROG	phrog_4478	peptidase	other
UHGV-1452311_16	UniRef90	UniRef90_A0A415YC08	Ribosomal-processing cysteine protease Prp	NA
UHGV-1452311_16	eggNOG-mapper	411462.DORLON_00788	Pfam:Peptidase_C108	NA
UHGV-1452311_16	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1452311_16	COG	COG2868	NA	NA
UHGV-1452311_17	Structural annotation	PF11344	NA	NA
UHGV-1452311_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1452311_18	UniRef90	UniRef90_A0A415YC05	Minor capsid protein	NA
UHGV-1452311_18	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-1452311_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1452311_18	COG	COG2369	NA	NA
UHGV-1452311_18	Structural annotation	PF06152	NA	NA
UHGV-1452311_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-1452311_19	UniRef90	UniRef90_A0A415YC12	Phage portal protein	NA
UHGV-1452311_19	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-1452311_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1452311_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1452311_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1452311_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1452311_20	UniRef90	UniRef90_A0A415YC09	PBSX family phage terminase large subunit	NA
UHGV-1452311_20	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-1452311_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1452311_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1452311_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1452311_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1452311_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1452311_21	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1452311_21	UniRef90	UniRef90_L1Q620	Terminase small subunit	NA
UHGV-1452311_21	eggNOG-mapper	1235799.C818_04216	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-1452311_21	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1452311_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1452311_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1452311_21	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1452311_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1452311_23	UniRef90	UniRef90_A0A417V855	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1452311_23	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-1452311_23	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1452311_23	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-1452311_24	PHROG	phrog_30258	NA	unknown function
UHGV-1452311_26	UniRef90	UniRef90_A0A374AM63	NA	NA
UHGV-1452311_26	Pfam	PF12664	NA	DUF3789
UHGV-1452311_29	eggNOG-mapper	1504823.CCMM01000008_gene1059	NA	NA
UHGV-1452311_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1452311_30	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1452311_30	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-1452311_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1452311_30	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-1452311_32	PHROG	phrog_17690	NA	unknown function
UHGV-1452311_32	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-1452311_32	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-1452311_34	PHROG	phrog_1123	NA	unknown function
UHGV-1452311_34	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-1452311_34	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-1452311_35	PHROG	phrog_16304	NA	unknown function
UHGV-1452311_35	UniRef90	UniRef90_L1Q6L3	NA	NA
UHGV-1452311_35	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-1452311_35	Pfam	PF19808	NA	DUF6291
UHGV-1452311_35	Structural annotation	PF19808	NA	NA
UHGV-1452311_36	PHROG	phrog_398	NA	unknown function
UHGV-1452311_36	UniRef90	UniRef90_UPI0001F01BA5	putative HNHc nuclease	NA
UHGV-1452311_36	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-1452311_36	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1452311_36	Structural annotation	PF16784, NF007281	NA	NA
UHGV-1452311_37	PHROG	phrog_14970	NA	unknown function
UHGV-1452311_37	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-1452311_37	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-1452311_37	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1452311_37	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1452311_38	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1452311_38	UniRef90	UniRef90_UPI001C8D41EE	siphovirus Gp157 family protein	NA
UHGV-1452311_38	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-1452311_38	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1452311_38	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1452311_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1452311_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1452311_41	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-1452311_41	eggNOG-mapper	748224.HMPREF9436_01450	NA	NA
UHGV-1452311_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1452311_41	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA