UHGV-1452410

Genome information

vOTU vOTU-019862

Genome length 24,870 bps

CDS count 40

Completeness 64.45% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-1452410
vOTU ID	vOTU-019862
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0181325
BioSample	SAMEA2151703
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.1
Jumbo phage	No

Genome content
Genome length	24,870 bps
GC content	45.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	90.62%
Average CDS length	568.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1452410_1	PHROG	phrog_13890	NA	unknown function
UHGV-1452410_1	eggNOG-mapper	742741.HMPREF9475_00396	NA	NA
UHGV-1452410_2	KOfam	K14059	int; integrase	NA
UHGV-1452410_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1452410_2	UniRef90	UniRef90_H7BVE3	Tyr recombinase domain-containing protein	NA
UHGV-1452410_2	eggNOG-mapper	411468.CLOSCI_01453	Phage integrase family	NA
UHGV-1452410_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1452410_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1452410_2	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-1452410_3	PHROG	phrog_37629	NA	unknown function
UHGV-1452410_3	UniRef90	UniRef90_UPI00164AD29E	HIRAN domain-containing protein	NA
UHGV-1452410_3	eggNOG-mapper	742741.HMPREF9475_00398	NA	NA
UHGV-1452410_3	Structural annotation	PF08797	NA	NA
UHGV-1452410_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1452410_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1452410_4	UniRef90	UniRef90_UPI0001FAC2C6	helix-turn-helix domain-containing protein	NA
UHGV-1452410_4	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-1452410_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1452410_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1452410_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1452410_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1452410_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1452410_6	UniRef90	UniRef90_UPI0008489EED	helix-turn-helix domain-containing protein	NA
UHGV-1452410_6	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-1452410_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1452410_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1452410_6	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1452410_7	PHROG	phrog_12453	NA	unknown function
UHGV-1452410_7	Pfam	PF21779	NA	DUF6874
UHGV-1452410_7	Structural annotation	PF21779	NA	NA
UHGV-1452410_8	PHROG	phrog_35340	NA	unknown function
UHGV-1452410_8	eggNOG-mapper	411468.CLOSCI_01464	NA	NA
UHGV-1452410_9	PHROG	phrog_6058	NA	unknown function
UHGV-1452410_9	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-1452410_9	Structural annotation	PF12728, NF033787	NA	NA
UHGV-1452410_10	PHROG	phrog_36092	NA	unknown function
UHGV-1452410_10	eggNOG-mapper	411468.CLOSCI_01466	NA	NA
UHGV-1452410_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1452410_11	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-1452410_11	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-1452410_11	Structural annotation	PF21578	NA	NA
UHGV-1452410_12	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1452410_12	PHROG	phrog_19890	NA	unknown function
UHGV-1452410_12	UniRef90	UniRef90_A0A0M6WRS2	SLT domain-containing protein	NA
UHGV-1452410_12	eggNOG-mapper	742741.HMPREF9475_00405	Transglycosylase SLT domain	NA
UHGV-1452410_12	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1452410_12	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1452410_12	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-1452410_13	PHROG	phrog_38136	NA	unknown function
UHGV-1452410_13	eggNOG-mapper	411468.CLOSCI_01471	NA	NA
UHGV-1452410_14	PHROG	phrog_824	NA	unknown function
UHGV-1452410_14	UniRef90	UniRef90_A0A494WKS7	VRR-NUC domain-containing protein	NA
UHGV-1452410_14	eggNOG-mapper	411468.CLOSCI_01472	VRR_NUC	NA
UHGV-1452410_14	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1452410_15	PHROG	phrog_20014	NA	unknown function
UHGV-1452410_15	eggNOG-mapper	742741.HMPREF9475_00408	NA	NA
UHGV-1452410_16	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1452410_16	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1452410_16	UniRef90	UniRef90_B0NDE7	Chromosome partitioning protein ParA	NA
UHGV-1452410_16	eggNOG-mapper	411468.CLOSCI_01475	Cellulose biosynthesis protein BcsQ	NA
UHGV-1452410_16	Pfam	PF13614	AAA domain	AAA_31
UHGV-1452410_16	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1452410_16	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1452410_17	PHROG	phrog_31560	NA	unknown function
UHGV-1452410_17	eggNOG-mapper	742741.HMPREF9475_00410	NA	NA
UHGV-1452410_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1452410_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1452410_19	UniRef90	UniRef90_B0NDE9	Cytosine-specific methyltransferase	NA
UHGV-1452410_19	eggNOG-mapper	742741.HMPREF9475_00411	C-5 cytosine-specific DNA methylase	NA
UHGV-1452410_19	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1452410_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1452410_19	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1452410_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1452410_19	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1452410_20	PHROG	phrog_24368	NA	unknown function
UHGV-1452410_20	eggNOG-mapper	742741.HMPREF9475_00412	NA	NA
UHGV-1452410_21	PHROG	phrog_37044	NA	unknown function
UHGV-1452410_21	eggNOG-mapper	411468.CLOSCI_01479	NA	NA
UHGV-1452410_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1452410_22	PHROG	phrog_15982	NA	unknown function
UHGV-1452410_22	UniRef90	UniRef90_A0A494WRE3	Nucleoid occlusion protein	NA
UHGV-1452410_22	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-1452410_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1452410_22	Pfam	PF12961	NA	DUF3850
UHGV-1452410_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1452410_22	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-1452410_23	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1452410_23	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1452410_23	UniRef90	UniRef90_B0NDF3	Endoribonuclease MazF	NA
UHGV-1452410_23	eggNOG-mapper	411468.CLOSCI_01481	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-1452410_23	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1452410_23	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1452410_23	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1452410_24	PHROG	phrog_34936	NA	unknown function
UHGV-1452410_24	eggNOG-mapper	742741.HMPREF9475_00416	NA	NA
UHGV-1452410_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1452410_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1452410_25	UniRef90	UniRef90_B0NDF5	Single-stranded DNA-binding protein	NA
UHGV-1452410_25	eggNOG-mapper	411468.CLOSCI_01483	Single-strand binding protein family	NA
UHGV-1452410_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1452410_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1452410_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1452410_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1452410_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1452410_26	PHROG	phrog_36526	NA	unknown function
UHGV-1452410_26	eggNOG-mapper	411468.CLOSCI_01484	NA	NA
UHGV-1452410_27	PHROG	phrog_1558	NA	unknown function
UHGV-1452410_27	eggNOG-mapper	742741.HMPREF9475_00419	NA	NA
UHGV-1452410_27	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1452410_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1452410_28	UniRef90	UniRef90_B0NDF8	HNH endonuclease domain protein	NA
UHGV-1452410_28	eggNOG-mapper	742741.HMPREF9475_00420	NA	NA
UHGV-1452410_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1452410_29	UniRef90	UniRef90_B0NDF9	Phage terminase, small subunit, P27 family	NA
UHGV-1452410_29	eggNOG-mapper	742741.HMPREF9475_00421	Phage terminase, small subunit	NA
UHGV-1452410_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1452410_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1452410_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1452410_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1452410_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1452410_30	UniRef90	UniRef90_B0NDG0	Putative phage terminase, large subunit	NA
UHGV-1452410_30	eggNOG-mapper	742741.HMPREF9475_00422	Phage Terminase	NA
UHGV-1452410_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1452410_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1452410_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1452410_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1452410_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-1452410_31	UniRef90	UniRef90_B0NDG1	Phage portal protein, HK97 family	NA
UHGV-1452410_31	eggNOG-mapper	411468.CLOSCI_01489	Phage portal protein	NA
UHGV-1452410_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1452410_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1452410_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1452410_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1452410_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1452410_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1452410_32	UniRef90	UniRef90_A0A1C5T576	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1452410_32	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-1452410_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1452410_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1452410_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1452410_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-1452410_33	UniRef90	UniRef90_A0A174ZQ75	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1452410_33	eggNOG-mapper	411468.CLOSCI_01491	Phage capsid family	NA
UHGV-1452410_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1452410_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1452410_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1452410_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1452410_34	UniRef90	UniRef90_A0A5S4VQ23	Phage gp6-like head-tail connector protein	NA
UHGV-1452410_34	eggNOG-mapper	411468.CLOSCI_01492	NA	NA
UHGV-1452410_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1452410_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1452410_35	UniRef90	UniRef90_A0A412T7B5	Phage head-tail joining protein	NA
UHGV-1452410_35	eggNOG-mapper	742741.HMPREF9475_00427	Phage head-tail joining protein	NA
UHGV-1452410_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1452410_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1452410_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1452410_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1452410_36	UniRef90	UniRef90_B0NDG6	Phage protein, HK97 gp10 family	NA
UHGV-1452410_36	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-1452410_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1452410_36	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1452410_37	PHROG	phrog_78	tail terminator	connector
UHGV-1452410_37	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-1452410_37	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1452410_38	PHROG	phrog_88	major tail protein	tail
UHGV-1452410_38	UniRef90	UniRef90_A0A412T728	Major tail protein	NA
UHGV-1452410_38	eggNOG-mapper	411468.CLOSCI_01496	phage major tail protein, phi13 family	NA
UHGV-1452410_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1452410_38	COG	COG5492	NA	NA
UHGV-1452410_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1452410_39	PHROG	phrog_13494	NA	unknown function
UHGV-1452410_39	eggNOG-mapper	411468.CLOSCI_01497	NA	NA
UHGV-1452410_39	Structural annotation	PF20378	NA	NA
UHGV-1452410_40	PHROG	phrog_25901	NA	unknown function
UHGV-1452410_40	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-1452410_40	Structural annotation	PF10109	NA	NA