UHGV-1452471

Genome information

Genome length 24,707 bps

CDS count 27

Completeness 61.44% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1452471
vOTU ID	vOTU-035321
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0180258
BioSample	SAMEA3541538
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20
Jumbo phage	No

Genome content
Genome length	24,707 bps
GC content	38.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	91.40%
Average CDS length	836.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1452471_3	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1452471_3	UniRef90	UniRef90_A0A095YYB5	Virulence-associated protein E	NA
UHGV-1452471_3	eggNOG-mapper	1219626.HMPREF1639_07120	Virulence-associated protein E	NA
UHGV-1452471_3	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1452471_3	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1452471_3	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-1452471_4	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1452471_4	UniRef90	UniRef90_UPI00056CA7F9	VRR-NUC domain-containing protein	NA
UHGV-1452471_4	eggNOG-mapper	706434.HMPREF9429_00391	VRR_NUC	NA
UHGV-1452471_4	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-1452471_5	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1452471_5	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1452471_5	UniRef90	UniRef90_A0A095XNT2	DEAD/DEAH box helicase	NA
UHGV-1452471_5	eggNOG-mapper	1219626.HMPREF1639_07130	SNF2 family N-terminal domain	NA
UHGV-1452471_5	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1452471_5	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1452471_5	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1452471_5	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1452471_5	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1452471_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1452471_6	UniRef90	UniRef90_UPI001121E44A	NA	NA
UHGV-1452471_6	eggNOG-mapper	1219626.HMPREF1639_07135	sigma factor activity	NA
UHGV-1452471_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1452471_6	Structural annotation	PF07374, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-1452471_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1452471_7	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1452471_7	UniRef90	UniRef90_A0A095XP98	Terminase	NA
UHGV-1452471_7	eggNOG-mapper	1219626.HMPREF1639_07145	Terminase Small Subunit	NA
UHGV-1452471_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1452471_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1452471_7	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1452471_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1452471_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1452471_8	UniRef90	UniRef90_A0A095YYC0	Terminase	NA
UHGV-1452471_8	eggNOG-mapper	1219626.HMPREF1639_07150	Phage terminase, large subunit, PBSX family	NA
UHGV-1452471_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-1452471_8	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1452471_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-1452471_9	UniRef90	UniRef90_UPI000AF926AF	capsid protein	NA
UHGV-1452471_9	eggNOG-mapper	1262449.CP6013_3191	NA	NA
UHGV-1452471_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1452471_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1452471_10	UniRef90	UniRef90_UPI0012EC933E	capsid protein	NA
UHGV-1452471_10	eggNOG-mapper	1294142.CINTURNW_1025	NA	NA
UHGV-1452471_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1452471_10	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-1452471_10	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-1452471_11	PHROG	phrog_6332	NA	unknown function
UHGV-1452471_11	UniRef90	UniRef90_A0A095XVC8	Cys_rich_CPCC domain-containing protein	NA
UHGV-1452471_11	eggNOG-mapper	1219626.HMPREF1639_03095	Cysteine-rich CPCC	NA
UHGV-1452471_11	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-1452471_13	PHROG	phrog_918	NA	unknown function
UHGV-1452471_13	UniRef90	UniRef90_UPI0005909CC3	NA	NA
UHGV-1452471_13	eggNOG-mapper	1260356.D920_00086	NA	NA
UHGV-1452471_13	Pfam	PF19791	NA	DUF6275
UHGV-1452471_13	Structural annotation	PF19791	NA	NA
UHGV-1452471_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1452471_14	UniRef90	UniRef90_UPI00068CC728	phage scaffolding protein	NA
UHGV-1452471_14	eggNOG-mapper	1395587.P364_0122070	Phage minor structural protein GP20	NA
UHGV-1452471_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1452471_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-1452471_15	UniRef90	UniRef90_A0A095ZSI9	Capsid protein	NA
UHGV-1452471_15	eggNOG-mapper	1219626.HMPREF1639_07180	NA	NA
UHGV-1452471_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1452471_16	PHROG	phrog_1378	NA	unknown function
UHGV-1452471_17	PHROG	phrog_8710	NA	unknown function
UHGV-1452471_17	eggNOG-mapper	1219626.HMPREF1639_07195	NA	NA
UHGV-1452471_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1452471_18	UniRef90	UniRef90_UPI001C0FDF90	minor capsid protein	NA
UHGV-1452471_18	eggNOG-mapper	1219626.HMPREF1639_07200	Minor capsid protein	NA
UHGV-1452471_19	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1452471_19	UniRef90	UniRef90_UPI001C10AADB	minor capsid protein	NA
UHGV-1452471_19	eggNOG-mapper	1219626.HMPREF1639_07205	NA	NA
UHGV-1452471_19	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1452471_19	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1452471_20	PHROG	phrog_820	major tail protein	tail
UHGV-1452471_20	eggNOG-mapper	1219626.HMPREF1639_07210	domain, Protein	NA
UHGV-1452471_20	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1452471_20	COG	COG5492	NA	NA
UHGV-1452471_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1452471_21	PHROG	phrog_8300	NA	unknown function
UHGV-1452471_21	eggNOG-mapper	1280692.AUJL01000027_gene2153	NA	NA
UHGV-1452471_21	Structural annotation	PF06896	NA	NA
UHGV-1452471_22	PHROG	phrog_8355	NA	unknown function
UHGV-1452471_22	UniRef90	UniRef90_A0A1H8JXL5	Bacteriophage Gp15 protein	NA
UHGV-1452471_22	eggNOG-mapper	1219626.HMPREF1639_07220	NA	NA
UHGV-1452471_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1452471_22	Structural annotation	PF06854	NA	NA
UHGV-1452471_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1452471_23	UniRef90	UniRef90_A0A1H8JY90	Phage-related protein	NA
UHGV-1452471_23	eggNOG-mapper	1219626.HMPREF1639_07225	SLT domain	NA
UHGV-1452471_23	COG	COG1511	NA	NA
UHGV-1452471_23	Structural annotation	PF09325	NA	NA
UHGV-1452471_24	PHROG	phrog_1194	NA	unknown function
UHGV-1452471_24	eggNOG-mapper	1219626.HMPREF1639_07230	NA	NA
UHGV-1452471_24	Pfam	PF20458	NA	DUF6711
UHGV-1452471_24	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1452471_25	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-1452471_25	UniRef90	UniRef90_A0A1H8JYF0	Chaperone of endosialidase	NA
UHGV-1452471_25	eggNOG-mapper	1219626.HMPREF1639_07235	NA	NA
UHGV-1452471_25	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1452471_26	PHROG	phrog_34633	NA	unknown function
UHGV-1452471_26	UniRef90	UniRef90_R5JH80	NA	NA
UHGV-1452471_26	eggNOG-mapper	1499683.CCFF01000017_gene2562	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1452471_26	Structural annotation	PF14545, PF18463, NF010435, COG5513	NA	NA
UHGV-1452471_27	PHROG	phrog_8309	NA	unknown function
UHGV-1452471_27	eggNOG-mapper	596315.HMPREF0634_0229	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1452471_27	COG	COG5301	Phage-related tail fiber protein	NA