UHGV-1452657

Genome information

vOTU vOTU-020178

Genome length 28,072 bps

CDS count 36

Completeness 65.42% (medium-quality)

geNomad score 0.9639

Prediction confidence Confident

Genome information
Genome ID	UHGV-1452657
vOTU ID	vOTU-020178
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0200614
BioSample	SAMN01795786
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9639
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.15
Jumbo phage	No

Genome content
Genome length	28,072 bps
GC content	62.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	91.82%
Average CDS length	720.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1452657_1	PHROG	phrog_4068	NA	unknown function
UHGV-1452657_1	Structural annotation	PF06657	NA	NA
UHGV-1452657_3	PHROG	phrog_5689	NA	unknown function
UHGV-1452657_3	UniRef90	UniRef90_UPI00101D6843	DNA-binding protein	NA
UHGV-1452657_3	eggNOG-mapper	220664.PFL_1983	Phage antirepressor protein KilAC domain	NA
UHGV-1452657_4	PHROG	phrog_29828	NA	unknown function
UHGV-1452657_4	eggNOG-mapper	220664.PFL_1984	NA	NA
UHGV-1452657_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1452657_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1452657_5	UniRef90	UniRef90_UPI00037E3739	LexA family transcriptional regulator	NA
UHGV-1452657_5	eggNOG-mapper	31535.RPC1_BPD3	sequence-specific DNA binding	NA
UHGV-1452657_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1452657_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1452657_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1452657_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1452657_6	UniRef90	UniRef90_UPI0003616425	helix-turn-helix domain-containing protein	NA
UHGV-1452657_6	eggNOG-mapper	399739.Pmen_3982	Helix-turn-helix XRE-family like proteins	NA
UHGV-1452657_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1452657_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1452657_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1452657_7	UniRef90	UniRef90_A0A1N6IQE0	Phage regulatory protein CII (CP76)	NA
UHGV-1452657_7	eggNOG-mapper	399739.Pmen_3981	NA	NA
UHGV-1452657_7	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-1452657_8	PHROG	phrog_54	DksA-like zinc-finger protein	other
UHGV-1452657_8	UniRef90	UniRef90_UPI00035F8505	TraR/DksA C4-type zinc finger protein	NA
UHGV-1452657_8	eggNOG-mapper	1301098.PKB_0564	Phage conjugal plasmid C-4 type zinc finger protein, TraR family	NA
UHGV-1452657_8	Pfam	PF01258	Prokaryotic dksA/traR C4-type zinc finger	zf-dskA_traR
UHGV-1452657_8	NCBIFam	TIGR02419.1	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	NA
UHGV-1452657_8	COG	COG1734	RNA polymerase-binding transcription factor DksA	NA
UHGV-1452657_8	Structural annotation	PF01258, MF_00926, TIGR02419, COG1734	NA	NA
UHGV-1452657_9	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1452657_9	PHROG	phrog_2249	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1452657_9	UniRef90	UniRef90_UPI000BB92E07	toprim domain-containing protein	NA
UHGV-1452657_9	eggNOG-mapper	1114970.PSF113_4313	Virulence-associated protein E	NA
UHGV-1452657_9	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-1452657_9	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1452657_9	COG	COG4643	NA	NA
UHGV-1452657_10	PHROG	phrog_4300	NA	unknown function
UHGV-1452657_10	eggNOG-mapper	1301098.PKB_0565	NA	NA
UHGV-1452657_11	PHROG	phrog_3897	NA	unknown function
UHGV-1452657_11	UniRef90	UniRef90_UPI000E2EC4C1	holin	NA
UHGV-1452657_11	eggNOG-mapper	287.DR97_3584	Bacteriophage holin Hol, superfamily III	NA
UHGV-1452657_11	Pfam	PF16085	Bacteriophage holin Hol, superfamily III	Phage_holin_3_5
UHGV-1452657_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1452657_12	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1452657_12	UniRef90	UniRef90_UPI00070EEF2A	HNH endonuclease	NA
UHGV-1452657_12	eggNOG-mapper	1301098.PKB_1272	HNH nucleases	NA
UHGV-1452657_12	AcrCatalog	cluster_19695	NA	NA
UHGV-1452657_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1452657_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1452657_13	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1452657_13	UniRef90	UniRef90_UPI000486FBBA	P27 family phage terminase small subunit	NA
UHGV-1452657_13	eggNOG-mapper	1301098.PKB_1273	Phage terminase, small subunit	NA
UHGV-1452657_13	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1452657_13	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1452657_13	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1452657_13	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1452657_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1452657_14	UniRef90	UniRef90_UPI00044D8FE6	terminase large subunit	NA
UHGV-1452657_14	eggNOG-mapper	1301098.PKB_1274	terminase	NA
UHGV-1452657_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1452657_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1452657_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1452657_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1452657_15	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1452657_15	UniRef90	UniRef90_A0A8E2VV52	Putative transmembrane protein PGPGW	NA
UHGV-1452657_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-1452657_16	UniRef90	UniRef90_UPI0003BB0E81	phage portal protein	NA
UHGV-1452657_16	eggNOG-mapper	1301098.PKB_1276	portal protein	NA
UHGV-1452657_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1452657_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1452657_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1452657_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1452657_17	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-1452657_17	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-1452657_17	UniRef90	UniRef90_UPI0002E61E88	S49 family peptidase	NA
UHGV-1452657_17	eggNOG-mapper	1301098.PKB_1277	peptidase	NA
UHGV-1452657_17	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-1452657_17	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-1452657_17	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-1452657_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-1452657_18	UniRef90	UniRef90_A0A1B8TIG9	Phage capsid protein	NA
UHGV-1452657_18	eggNOG-mapper	1301098.PKB_1278	Phage capsid family	NA
UHGV-1452657_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1452657_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1452657_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1452657_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1452657_20	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1452657_20	eggNOG-mapper	1301098.PKB_1280	NA	NA
UHGV-1452657_20	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-1452657_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-1452657_21	UniRef90	UniRef90_UPI0004463154	head-tail adaptor protein	NA
UHGV-1452657_21	eggNOG-mapper	1437882.AZRU01000006_gene1533	Phage head-tail joining protein	NA
UHGV-1452657_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1452657_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1452657_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1452657_22	PHROG	phrog_13314	NA	unknown function
UHGV-1452657_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1452657_23	UniRef90	UniRef90_A0A0T6K2R0	HK97 gp10 family phage protein	NA
UHGV-1452657_23	eggNOG-mapper	1441629.PCH70_35360	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1452657_24	PHROG	phrog_176	tail terminator	connector
UHGV-1452657_24	UniRef90	UniRef90_A0A367MCL3	NA	NA
UHGV-1452657_24	eggNOG-mapper	1357275.AVEL02000138_gene66	NA	NA
UHGV-1452657_24	Pfam	PF11367	NA	DUF3168
UHGV-1452657_25	PHROG	phrog_158	major tail protein	tail
UHGV-1452657_25	eggNOG-mapper	1240350.AMZE01000130_gene417	NA	NA
UHGV-1452657_26	PHROG	phrog_6454	NA	unknown function
UHGV-1452657_26	eggNOG-mapper	1240350.AMZE01000130_gene416	NA	NA
UHGV-1452657_27	PHROG	phrog_7493	NA	unknown function
UHGV-1452657_27	UniRef90	UniRef90_A0A7Z2QET3	Topoisomerase	NA
UHGV-1452657_27	eggNOG-mapper	1388763.O165_005605	NA	NA
UHGV-1452657_28	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-1452657_28	UniRef90	UniRef90_A0A5J6RAK7	Phage tail tape measure protein	NA
UHGV-1452657_28	eggNOG-mapper	1437882.AZRU01000006_gene1540	tape measure protein	NA
UHGV-1452657_28	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1452657_28	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-1452657_28	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-1452657_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1452657_28	Structural annotation	PF06791, MF_04138, TIGR01541, COG5281	NA	NA
UHGV-1452657_29	PHROG	phrog_14	minor tail protein	tail
UHGV-1452657_29	UniRef90	UniRef90_A0A1B8TDI5	Phage tail protein	NA
UHGV-1452657_29	eggNOG-mapper	1437882.AZRU01000006_gene1541	Phage minor tail protein	NA
UHGV-1452657_29	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-1452657_29	COG	COG4718	Phage tail protein	NA
UHGV-1452657_29	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1452657_30	PHROG	phrog_18	minor tail protein	tail
UHGV-1452657_30	UniRef90	UniRef90_A0A2I0SYV0	Hydrolase nlp p60	NA
UHGV-1452657_30	eggNOG-mapper	1437882.AZRU01000006_gene1542	Phage minor tail protein L	NA
UHGV-1452657_30	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1452657_30	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-1452657_30	COG	COG4672	Phage tail protein	NA
UHGV-1452657_30	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-1452657_31	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-1452657_31	PHROG	phrog_30	minor tail protein	tail
UHGV-1452657_31	UniRef90	UniRef90_A0A8G3ZUA5	Phage tail protein	NA
UHGV-1452657_31	eggNOG-mapper	1437882.AZRU01000006_gene1543	NLP P60 protein	NA
UHGV-1452657_31	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-1452657_31	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1452657_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1452657_31	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-1452657_32	PHROG	phrog_914	NA	unknown function
UHGV-1452657_32	UniRef90	UniRef90_B1JCY3	Putative phage-related lipoprotein	NA
UHGV-1452657_32	eggNOG-mapper	390235.PputW619_3929	NA	NA
UHGV-1452657_32	Structural annotation	PF12092	NA	NA
UHGV-1452657_33	PHROG	phrog_32	tail assembly protein	tail
UHGV-1452657_33	UniRef90	UniRef90_A0A8G3ZSC3	Tail assembly protein	NA
UHGV-1452657_33	eggNOG-mapper	1005395.CSV86_05057	Bacteriophage lambda tail assembly I	NA
UHGV-1452657_33	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-1452657_33	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-1452657_34	PHROG	phrog_2589	tail protein	tail
UHGV-1452657_34	UniRef90	UniRef90_UPI00124503E2	host specificity protein J	NA
UHGV-1452657_34	eggNOG-mapper	1437882.AZRU01000006_gene1546	NA	NA
UHGV-1452657_34	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1452657_34	Pfam	PF09327	NA	DUF1983
UHGV-1452657_34	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1452657_34	Structural annotation	PF09327, PF13550, PF16389, PF14879, NF040662, NF038116, COG4733	NA	NA
UHGV-1452657_35	PHROG	phrog_4062	NA	unknown function
UHGV-1452657_36	PHROG	phrog_2712	tail fiber protein	tail
UHGV-1452657_36	UniRef90	UniRef90_A0A3M4LCB3	Tail fiber domain-containing protein (Fragment)	NA
UHGV-1452657_36	eggNOG-mapper	1437882.AZRU01000006_gene1549	NA	NA