UHGV-1452770

Genome information

Genome length 24,698 bps

CDS count 36

Completeness 67.27% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-1452770
vOTU ID	vOTU-017964
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0180206
BioSample	SAMN02334000
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.36
Jumbo phage	No

Genome content
Genome length	24,698 bps
GC content	58.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.34%
Average CDS length	642.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1452770_1	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1452770_1	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-1452770_2	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1452770_2	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-1452770_2	eggNOG-mapper	1511.CLOST_1546	HNH endonuclease	NA
UHGV-1452770_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1452770_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1452770_2	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1452770_4	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1452770_4	UniRef90	UniRef90_A0A845R8D4	NA	NA
UHGV-1452770_4	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-1452770_4	Pfam	PF06356	NA	DUF1064
UHGV-1452770_4	Structural annotation	PF06356	NA	NA
UHGV-1452770_7	Structural annotation	PF10013	NA	NA
UHGV-1452770_9	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1452770_9	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-1452770_9	eggNOG-mapper	706433.HMPREF9430_01279	NA	NA
UHGV-1452770_9	Structural annotation	PF08271	NA	NA
UHGV-1452770_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1452770_10	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-1452770_10	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-1452770_11	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-1452770_11	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1452770_12	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1452770_12	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-1452770_12	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-1452770_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1452770_13	PHROG	phrog_1066	NA	unknown function
UHGV-1452770_13	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-1452770_13	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1452770_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1452770_14	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-1452770_14	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-1452770_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1452770_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1452770_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1452770_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1452770_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-1452770_15	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-1452770_15	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-1452770_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1452770_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1452770_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1452770_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1452770_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1452770_16	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-1452770_16	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1452770_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1452770_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1452770_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1452770_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1452770_17	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-1452770_17	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1452770_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1452770_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1452770_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1452770_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1452770_18	PHROG	phrog_5223	neck protein	connector
UHGV-1452770_18	UniRef90	UniRef90_UPI000BEC4770	head-tail connector protein	NA
UHGV-1452770_19	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1452770_19	UniRef90	UniRef90_UPI001B02B074	phage head closure protein	NA
UHGV-1452770_19	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-1452770_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1452770_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1452770_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1452770_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1452770_20	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-1452770_20	Structural annotation	PF05657	NA	NA
UHGV-1452770_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1452770_21	Structural annotation	TIGR01725	NA	NA
UHGV-1452770_22	PHROG	phrog_88	major tail protein	tail
UHGV-1452770_22	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-1452770_22	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-1452770_22	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1452770_22	COG	COG5492	NA	NA
UHGV-1452770_22	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1452770_23	Structural annotation	PF11836	NA	NA
UHGV-1452770_24	PHROG	phrog_33680	NA	unknown function
UHGV-1452770_24	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-1452770_24	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-1452770_24	COG	COG5283	Phage-related tail protein	NA
UHGV-1452770_24	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1452770_25	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1452770_25	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1452770_25	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1452770_25	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1452770_26	PHROG	phrog_26795	NA	unknown function
UHGV-1452770_26	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-1452770_26	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-1452770_26	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1452770_27	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-1452770_28	Structural annotation	PF10651	NA	NA
UHGV-1452770_29	PHROG	phrog_19111	NA	unknown function
UHGV-1452770_29	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-1452770_29	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1452770_30	PHROG	phrog_37900	NA	unknown function
UHGV-1452770_30	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-1452770_30	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-1452770_30	Pfam	PF19789	NA	DUF6273
UHGV-1452770_30	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1452770_30	Structural annotation	PF19789	NA	NA
UHGV-1452770_34	PHROG	phrog_937	hemolysin	other
UHGV-1452770_35	PHROG	phrog_443	holin	lysis
UHGV-1452770_35	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-1452770_35	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1452770_35	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1452770_35	Structural annotation	PF16945	NA	NA
UHGV-1452770_36	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1452770_36	PHROG	phrog_670	endolysin	lysis
UHGV-1452770_36	UniRef90	UniRef90_R8W9R7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1452770_36	eggNOG-mapper	1203606.HMPREF1526_00589	Ami_2	NA
UHGV-1452770_36	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1452770_36	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1452770_36	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA