UHGV-1453058

Genome information

vOTU vOTU-032097

Genome length 15,196 bps

CDS count 20

Completeness 75.91% (medium-quality)

geNomad score 0.9574

Prediction confidence Confident

Genome information
Genome ID	UHGV-1453058
vOTU ID	vOTU-032097
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0094089
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9574
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.53
Jumbo phage	No

Genome content
Genome length	15,196 bps
GC content	36.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	87.98%
Average CDS length	670.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1453058_3	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1453058_3	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-1453058_3	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1453058_3	Structural annotation	PF17427	NA	NA
UHGV-1453058_4	Pfam	PF05435	Phi-29 DNA terminal protein GP3	Phi-29_GP3
UHGV-1453058_4	Structural annotation	PF05435	NA	NA
UHGV-1453058_5	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1453058_5	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1453058_5	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-1453058_5	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1453058_5	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1453058_5	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1453058_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-1453058_6	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-1453058_6	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1453058_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1453058_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1453058_8	UniRef90	UniRef90_A0A6N3EQT3	Peptidoglycan binding domain protein	NA
UHGV-1453058_8	Structural annotation	NF033743, COG0791	NA	NA
UHGV-1453058_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1453058_10	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-1453058_10	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-1453058_10	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1453058_11	PHROG	phrog_2248	tail protein	tail
UHGV-1453058_11	UniRef90	UniRef90_A0A843HU95	Caud_tail_N domain-containing protein	NA
UHGV-1453058_11	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-1453058_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1453058_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1453058_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1453058_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-1453058_12	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-1453058_12	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-1453058_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1453058_12	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1453058_13	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1453058_13	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA