UHGV-1453774

Genome information

vOTU vOTU-020823

Genome length 48,049 bps

CDS count 68

Completeness 60.57% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-1453774
vOTU ID	vOTU-020823
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0304555
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29
Jumbo phage	No

Genome content
Genome length	48,049 bps
GC content	38.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	79.67%
Average CDS length	564.13 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1453774_1	PHROG	phrog_28918	NA	unknown function
UHGV-1453774_1	UniRef90	UniRef90_A0A1C5RYZ6	Phage-related protein	NA
UHGV-1453774_1	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-1453774_1	COG	COG5412	Phage-related protein	NA
UHGV-1453774_2	PHROG	phrog_28918	NA	unknown function
UHGV-1453774_2	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-1453774_2	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1453774_5	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-1453774_5	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1453774_6	PHROG	phrog_1129	holin	lysis
UHGV-1453774_6	UniRef90	UniRef90_A0A2M8Z2Y7	Holin family Hol44 protein (Superfamily V)	NA
UHGV-1453774_6	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1453774_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1453774_6	Structural annotation	PF16079	NA	NA
UHGV-1453774_7	Structural annotation	PF05657	NA	NA
UHGV-1453774_8	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1453774_8	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-1453774_8	eggNOG-mapper	320843.Q4ZBR0_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1453774_8	Structural annotation	PF17375	NA	NA
UHGV-1453774_9	UniRef90	UniRef90_UPI000AABEC73	LLM class flavin-dependent oxidoreductase	NA
UHGV-1453774_9	eggNOG-mapper	1499683.CCFF01000017_gene2117	NA	NA
UHGV-1453774_9	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-1453774_10	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-1453774_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1453774_13	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1453774_13	PHROG	phrog_1	integrase	integration and excision
UHGV-1453774_13	UniRef90	UniRef90_UPI001D0BAB17	tyrosine-type recombinase/integrase	NA
UHGV-1453774_13	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1453774_13	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1453774_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1453774_13	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1453774_13	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1453774_14	UniRef90	UniRef90_UPI001D0A24DA	SGNH/GDSL hydrolase family protein	NA
UHGV-1453774_14	eggNOG-mapper	1122931.AUAE01000019_gene984	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-1453774_15	UniRef90	UniRef90_UPI00156D7781	SGNH/GDSL hydrolase family protein	NA
UHGV-1453774_15	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-1453774_15	Structural annotation	PF10651, COG5513	NA	NA
UHGV-1453774_16	PHROG	phrog_19695	NA	unknown function
UHGV-1453774_16	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-1453774_16	Structural annotation	PF19714	NA	NA
UHGV-1453774_17	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1453774_17	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1453774_19	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-1453774_21	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1453774_22	PHROG	phrog_16490	NA	unknown function
UHGV-1453774_22	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-1453774_24	PHROG	phrog_21718	NA	unknown function
UHGV-1453774_24	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-1453774_25	UniRef90	UniRef90_A0A317UDM1	Sigma70_r4 domain-containing protein	NA
UHGV-1453774_25	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-1453774_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1453774_25	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-1453774_26	PHROG	phrog_937	hemolysin	other
UHGV-1453774_27	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-1453774_28	PHROG	phrog_29	major head protein	head and packaging
UHGV-1453774_28	UniRef90	UniRef90_R0C0Z5	S-l_SbsC_C domain-containing protein	NA
UHGV-1453774_28	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-1453774_28	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1453774_28	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1453774_29	PHROG	phrog_909	major head protein	head and packaging
UHGV-1453774_29	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-1453774_29	Structural annotation	PF02924	NA	NA
UHGV-1453774_30	Structural annotation	PF14265	NA	NA
UHGV-1453774_32	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-1453774_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-1453774_34	UniRef90	UniRef90_A0A412EMP0	Phage portal protein	NA
UHGV-1453774_34	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1453774_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1453774_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1453774_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1453774_35	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-1453774_35	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-1453774_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1453774_35	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-1453774_36	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1453774_36	UniRef90	UniRef90_UPI001D0C13B9	HNH endonuclease	NA
UHGV-1453774_36	eggNOG-mapper	1141106.CAIB01000133_gene1117	HNH endonuclease	NA
UHGV-1453774_36	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1453774_36	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1453774_37	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1453774_37	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-1453774_37	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-1453774_37	COG	COG5410	NA	NA
UHGV-1453774_37	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1453774_38	PHROG	phrog_12728	NA	unknown function
UHGV-1453774_38	UniRef90	UniRef90_A0A6H0X686	Putative signal peptide-containing lipoprotein	NA
UHGV-1453774_38	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-1453774_47	PHROG	phrog_850	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1453774_47	UniRef90	UniRef90_A0A3E5EPH1	NA	NA
UHGV-1453774_47	eggNOG-mapper	476272.RUMHYD_01913	NA	NA
UHGV-1453774_47	Pfam	PF11443	NA	DUF2828
UHGV-1453774_47	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-1453774_47	Structural annotation	PF11443, MF_01340, COG2304	NA	NA
UHGV-1453774_48	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1453774_48	UniRef90	UniRef90_A0A1I7HBC9	DNA binding domain-containing protein, excisionase family	NA
UHGV-1453774_48	eggNOG-mapper	537874.B3GVX7_9CAUD	HNH endonuclease	NA
UHGV-1453774_48	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1453774_48	Pfam	PF08279	HTH domain	HTH_11
UHGV-1453774_50	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-1453774_53	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1453774_53	UniRef90	UniRef90_G9B1F6	Gp55	NA
UHGV-1453774_53	eggNOG-mapper	764595.G9B1F6_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1453774_53	Structural annotation	PF12647	NA	NA
UHGV-1453774_54	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1453774_54	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1453774_55	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-1453774_57	PHROG	phrog_13890	NA	unknown function
UHGV-1453774_57	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-1453774_65	PHROG	phrog_8680	NA	unknown function
UHGV-1453774_65	UniRef90	UniRef90_A0A3R6E2A5	NA	NA
UHGV-1453774_65	eggNOG-mapper	476272.RUMHYD_01896	NA	NA
UHGV-1453774_65	Pfam	PF14386	NA	DUF4417
UHGV-1453774_65	Structural annotation	PF14386	NA	NA
UHGV-1453774_66	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1453774_66	PHROG	phrog_95	integrase	integration and excision
UHGV-1453774_66	UniRef90	UniRef90_A0A373NR59	Recombinase family protein	NA
UHGV-1453774_66	eggNOG-mapper	457412.RSAG_00880	Resolvase, N terminal domain	NA
UHGV-1453774_66	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1453774_66	Pfam	PF07508	Recombinase	Recombinase
UHGV-1453774_66	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1453774_66	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1453774_66	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-1453774_68	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1453774_68	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1453774_68	UniRef90	UniRef90_A0A7U6KDI2	Helicase loader DnaI	NA
UHGV-1453774_68	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-1453774_68	COG	COG1484	DNA replication protein DnaC	NA