UHGV-1454104

Genome information

Genome length 43,178 bps

CDS count 60

Completeness 87.12% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-1454104
vOTU ID	vOTU-034616
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0285038
BioSample	NA
Country	Kazakhstan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.11
Jumbo phage	No

Genome content
Genome length	43,178 bps
GC content	33.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	83.77%
Average CDS length	606.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1454104_1	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1454104_1	UniRef90	UniRef90_A0A843GSL4	Helix-turn-helix transcriptional regulator	NA
UHGV-1454104_1	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-1454104_1	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1454104_1	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1454104_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1454104_2	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1454104_2	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-1454104_2	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-1454104_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1454104_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1454104_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1454104_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-1454104_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1454104_3	PHROG	phrog_443	holin	lysis
UHGV-1454104_3	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-1454104_3	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-1454104_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1454104_3	Structural annotation	PF16945	NA	NA
UHGV-1454104_4	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1454104_4	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-1454104_4	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-1454104_4	Pfam	PF14359	NA	DUF4406
UHGV-1454104_4	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1454104_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1454104_5	PHROG	phrog_435	endolysin	lysis
UHGV-1454104_5	UniRef90	UniRef90_B0G4K0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1454104_5	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1454104_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1454104_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1454104_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1454104_5	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-1454104_6	PHROG	phrog_64	portal protein	head and packaging
UHGV-1454104_6	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-1454104_6	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1454104_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1454104_6	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1454104_7	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1454104_7	UniRef90	UniRef90_A0A349YJR5	ADPrib_exo_Tox domain-containing protein	NA
UHGV-1454104_7	eggNOG-mapper	1567015.A0A0A7RUI1_9VIRU	Phage Mu protein F like protein	NA
UHGV-1454104_8	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1454104_10	Structural annotation	PF06133	NA	NA
UHGV-1454104_11	PHROG	phrog_1315	NA	unknown function
UHGV-1454104_12	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1454104_12	eggNOG-mapper	997296.PB1_16214	NA	NA
UHGV-1454104_12	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-1454104_13	Structural annotation	PF02924	NA	NA
UHGV-1454104_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-1454104_14	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-1454104_14	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-1454104_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1454104_14	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1454104_16	PHROG	phrog_4020	NA	unknown function
UHGV-1454104_16	eggNOG-mapper	1121342.AUCO01000012_gene1692	NA	NA
UHGV-1454104_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1454104_18	eggNOG-mapper	632292.Calhy_0769	Phage virion morphogenesis	NA
UHGV-1454104_18	COG	COG5005	NA	NA
UHGV-1454104_18	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1454104_19	PHROG	phrog_7585	NA	unknown function
UHGV-1454104_19	eggNOG-mapper	1196322.A370_04060	NA	NA
UHGV-1454104_19	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1454104_20	PHROG	phrog_6686	tail tube protein	tail
UHGV-1454104_20	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-1454104_20	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-1454104_20	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1454104_21	PHROG	phrog_6280	NA	unknown function
UHGV-1454104_21	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-1454104_21	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-1454104_22	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1454104_22	UniRef90	UniRef90_A0A351TJS6	Phage tail tape measure protein	NA
UHGV-1454104_22	eggNOG-mapper	1410670.JHXF01000015_gene2302	Phage tail tape measure protein, TP901 family	NA
UHGV-1454104_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1454104_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1454104_22	COG	COG5283	Phage-related tail protein	NA
UHGV-1454104_22	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-1454104_23	PHROG	phrog_36410	NA	unknown function
UHGV-1454104_23	UniRef90	UniRef90_A0A7X9C3E1	Phage tail family protein	NA
UHGV-1454104_23	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-1454104_23	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1454104_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1454104_23	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1454104_24	PHROG	phrog_538	minor tail protein	tail
UHGV-1454104_24	UniRef90	UniRef90_UPI0006B2A1E0	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1454104_24	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1454104_24	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1454104_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1454104_25	PHROG	phrog_1220	head protein	head and packaging
UHGV-1454104_25	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-1454104_25	eggNOG-mapper	1033737.CAEV01000028_gene283	NA	NA
UHGV-1454104_25	Structural annotation	PF08931, PF20747	NA	NA
UHGV-1454104_26	PHROG	phrog_937	hemolysin	other
UHGV-1454104_26	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-1454104_29	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1454104_29	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1454104_29	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-1454104_29	eggNOG-mapper	573061.Clocel_1457	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-1454104_29	PADLOC	drt-UG29	DRT	DRT
UHGV-1454104_29	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1454104_29	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1454104_29	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1454104_29	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-1454104_30	Structural annotation	PF08804	NA	NA
UHGV-1454104_31	UniRef90	UniRef90_A0A7X8WD06	NA	NA
UHGV-1454104_31	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-1454104_32	PHROG	phrog_236	nucleotide kinase	other
UHGV-1454104_32	UniRef90	UniRef90_UPI001D04CE99	NA	NA
UHGV-1454104_32	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-1454104_32	Pfam	PF11753	NA	DUF3310
UHGV-1454104_32	Structural annotation	PF11753	NA	NA
UHGV-1454104_33	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1454104_33	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1454104_33	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-1454104_33	eggNOG-mapper	1158345.JNLL01000001_gene729	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-1454104_33	Pfam	PF02811	PHP domain	PHP
UHGV-1454104_33	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1454104_33	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1454104_33	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-1454104_33	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-1454104_33	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1454104_33	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-1454104_35	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1454104_35	UniRef90	UniRef90_UPI00164E7D72	sugar-phospahte nucleotidyltransferase	NA
UHGV-1454104_35	eggNOG-mapper	1235797.C816_04032	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-1454104_35	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1454104_35	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-1454104_36	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-1454104_36	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-1454104_36	UniRef90	UniRef90_A0A843GSV7	RECA_3 domain-containing protein	NA
UHGV-1454104_36	eggNOG-mapper	1121267.JHZL01000006_gene901	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-1454104_36	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-1454104_36	COG	COG0468	RecA/RadA recombinase	NA
UHGV-1454104_36	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-1454104_41	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-1454104_41	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-1454104_41	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-1454104_41	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-1454104_43	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1454104_43	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1454104_45	PHROG	phrog_1909	NA	unknown function
UHGV-1454104_45	eggNOG-mapper	1458697.W6E8E8_9CAUD	NA	NA
UHGV-1454104_46	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-1454104_46	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-1454104_46	UniRef90	UniRef90_UPI001373859D	AAA family ATPase	NA
UHGV-1454104_46	eggNOG-mapper	278957.ABEA03000120_gene1205	Associated with various cellular activities	NA
UHGV-1454104_46	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-1454104_46	Pfam	PF08406	CbbQ/NirQ/NorQ C-terminal	CbbQ_C
UHGV-1454104_46	COG	COG0714	MoxR-like ATPase	NA
UHGV-1454104_46	Structural annotation	PF07728, MF_00016, TIGR01650, COG0714	NA	NA
UHGV-1454104_47	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1454104_47	eggNOG-mapper	320843.Q4ZBR0_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1454104_48	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1454104_48	UniRef90	UniRef90_A0A843GQD5	DNA_ligase_aden domain-containing protein	NA
UHGV-1454104_48	eggNOG-mapper	720555.BATR1942_09670	NAD-dependent DNA ligase adenylation domain	NA
UHGV-1454104_48	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1454104_50	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1454104_50	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1454104_51	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-1454104_60	Structural annotation	PF21485, MF_00085, NF003076, COG0231	NA	NA