UHGV-1454256

Genome information

Genome length 34,495 bps

CDS count 56

Completeness 98.92% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-1454256
vOTU ID	vOTU-013271
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0235877
BioSample	SAMEA2738157
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.2
Jumbo phage	No

Genome content
Genome length	34,495 bps
GC content	48.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.27%
Average CDS length	570.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1454256_1	PHROG	phrog_290	minor tail protein	tail
UHGV-1454256_1	eggNOG-mapper	234621.RER_25210	NA	NA
UHGV-1454256_1	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-1454256_3	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1454256_3	UniRef90	UniRef90_A0A660MB66	Phage tail tape measure protein	NA
UHGV-1454256_3	eggNOG-mapper	697281.Mahau_2902	tail tape measure protein TP901 core region	NA
UHGV-1454256_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1454256_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1454256_3	COG	COG5283	Phage-related tail protein	NA
UHGV-1454256_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1454256_4	PHROG	phrog_5577	minor tail protein	tail
UHGV-1454256_4	UniRef90	UniRef90_A0A660MA29	Phage tail family protein	NA
UHGV-1454256_4	eggNOG-mapper	1280692.AUJL01000004_gene834	Phage tail protein	NA
UHGV-1454256_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1454256_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-1454256_4	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1454256_5	PHROG	phrog_1885	minor tail protein	tail
UHGV-1454256_5	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1454256_9	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-1454256_9	eggNOG-mapper	1196031.ALEG01000039_gene1828	NA	NA
UHGV-1454256_13	UniRef90	UniRef90_A0A660MB57	NA	NA
UHGV-1454256_13	eggNOG-mapper	1158612.I580_00636	lysozyme	NA
UHGV-1454256_13	Pfam	PF05257	CHAP domain	CHAP
UHGV-1454256_13	Pfam	PF13946	NA	DUF4214
UHGV-1454256_13	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1454256_17	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1454256_17	UniRef90	UniRef90_A0A416D916	Single-stranded DNA-binding protein	NA
UHGV-1454256_17	eggNOG-mapper	1397699.JNIS01000001_gene2444	ERF superfamily	NA
UHGV-1454256_17	Pfam	PF04404	ERF superfamily	ERF
UHGV-1454256_19	PHROG	phrog_824	NA	unknown function
UHGV-1454256_23	KOfam	K18955	whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator	NA
UHGV-1454256_23	PHROG	phrog_1333	NA	unknown function
UHGV-1454256_23	UniRef90	UniRef90_A0A660MB49	WhiB family transcriptional regulator	NA
UHGV-1454256_23	eggNOG-mapper	1122994.AUFR01000031_gene613	Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA	NA
UHGV-1454256_23	Pfam	PF02467	Transcription factor WhiB	Whib
UHGV-1454256_23	Structural annotation	PF02467, MF_01479	NA	NA
UHGV-1454256_31	UniRef90	UniRef90_A0A660MCK6	GH16 domain-containing protein	NA
UHGV-1454256_31	eggNOG-mapper	1280686.AUKE01000009_gene875	Beta/gamma crystallins	NA
UHGV-1454256_31	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-1454256_32	eggNOG-mapper	272134.KB731324_gene3488	tape measure	NA
UHGV-1454256_32	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1454256_32	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1454256_34	UniRef90	UniRef90_A0A660MCT5	Helix-turn-helix domain-containing protein	NA
UHGV-1454256_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1454256_35	Structural annotation	PF11305, NF033216	NA	NA
UHGV-1454256_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1454256_38	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1454256_38	UniRef90	UniRef90_A0A660M9I2	ParB domain-containing protein	NA
UHGV-1454256_38	eggNOG-mapper	909663.KI867149_gene3250	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1454256_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1454256_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1454256_38	COG	COG0863	DNA modification methylase	NA
UHGV-1454256_38	Structural annotation	PF02195, PF01170, MF_02015, MF_01872, TIGR01177, TIGR04285, COG1041, COG5119	NA	NA
UHGV-1454256_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1454256_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1454256_43	UniRef90	UniRef90_A0A660MA96	Single-stranded DNA-binding protein	NA
UHGV-1454256_43	eggNOG-mapper	1122172.KB890259_gene1459	Single-stranded DNA-binding protein	NA
UHGV-1454256_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1454256_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1454256_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1454256_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1454256_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1454256_46	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1454256_46	eggNOG-mapper	797304.Natgr_3429	chromosome segregation	NA
UHGV-1454256_46	COG	COG5410	NA	NA
UHGV-1454256_46	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1454256_47	PHROG	phrog_2662	portal protein	head and packaging
UHGV-1454256_47	UniRef90	UniRef90_A0A660MAD9	Phage portal protein	NA
UHGV-1454256_47	eggNOG-mapper	234621.RER_25110	Portal protein	NA
UHGV-1454256_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1454256_47	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1454256_47	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1454256_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1454256_47	Structural annotation	PF04860, PF04233, MF_04135, TIGR01537, TIGR01641, COG4695, COG2369	NA	NA
UHGV-1454256_48	PHROG	phrog_617	major head protein	head and packaging
UHGV-1454256_48	COG	COG3740	Phage head maturation protease	NA
UHGV-1454256_49	PHROG	phrog_10	major head protein	head and packaging
UHGV-1454256_49	UniRef90	UniRef90_A0A660MB76	Phage major capsid protein	NA
UHGV-1454256_49	eggNOG-mapper	1429046.RR21198_3995	Phage capsid family	NA
UHGV-1454256_49	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1454256_49	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1454256_49	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1454256_49	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1454256_51	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1454256_51	eggNOG-mapper	234621.RER_25160	NA	NA
UHGV-1454256_51	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1454256_51	Structural annotation	TIGR02215	NA	NA
UHGV-1454256_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1454256_53	eggNOG-mapper	234621.RER_25180	NA	NA