UHGV-1456076

Genome information

Genome length 76,340 bps

CDS count 88

Completeness 90.43% (high-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-1456076
vOTU ID	vOTU-068427
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0349164
BioSample	SAMEA2738178
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.7
Jumbo phage	No

Genome content
Genome length	76,340 bps
GC content	40.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	87.26%
Average CDS length	758.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1456076_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1456076_2	PHROG	phrog_894	endolysin	lysis
UHGV-1456076_2	UniRef90	UniRef90_A0A8B2B463	Peptidase M15A	NA
UHGV-1456076_2	eggNOG-mapper	1236504.HMPREF2132_01945	Peptidase M15	NA
UHGV-1456076_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1456076_2	COG	COG3108	NA	NA
UHGV-1456076_2	Structural annotation	PF08291, COG3108	NA	NA
UHGV-1456076_3	UniRef90	UniRef90_A0A495VV42	Holin family protein	NA
UHGV-1456076_3	eggNOG-mapper	1236504.HMPREF2132_11285	NA	NA
UHGV-1456076_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1456076_4	Structural annotation	PF10043, NF008028, COG5544	NA	NA
UHGV-1456076_5	PHROG	phrog_17422	NA	unknown function
UHGV-1456076_5	eggNOG-mapper	1287476.HMPREF1651_06170	cellulase activity	NA
UHGV-1456076_5	COG	COG4926	Phage-related protein	NA
UHGV-1456076_7	UniRef90	UniRef90_UPI001C5DE33A	acyl carrier protein	NA
UHGV-1456076_7	Pfam	PF00550	Phosphopantetheine attachment site	PP-binding
UHGV-1456076_7	COG	COG0236	Acyl carrier protein	NA
UHGV-1456076_11	Pfam	PF20459	NA	DUF6712
UHGV-1456076_11	Structural annotation	PF20459	NA	NA
UHGV-1456076_12	eggNOG-mapper	1235803.C825_03414	NA	NA
UHGV-1456076_12	Structural annotation	PF05136, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-1456076_13	Structural annotation	PF08863	NA	NA
UHGV-1456076_14	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1456076_14	UniRef90	UniRef90_A0A096B9T1	Conjugal transfer protein	NA
UHGV-1456076_14	eggNOG-mapper	1236504.HMPREF2132_01885	DNA restriction-modification system	NA
UHGV-1456076_14	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1456076_14	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-1456076_15	eggNOG-mapper	1002367.HMPREF0673_02207	NA	NA
UHGV-1456076_15	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1456076_18	Structural annotation	TIGR01603, COG5437	NA	NA
UHGV-1456076_19	UniRef90	UniRef90_A0A3E4Z716	Flg_new_2 domain-containing protein	NA
UHGV-1456076_19	Structural annotation	PF05065, PF18998, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1456076_20	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-1456076_20	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-1456076_20	UniRef90	UniRef90_A0A2L2WN07	Signal peptide peptidase SppA, 36K type	NA
UHGV-1456076_20	eggNOG-mapper	1236504.HMPREF2132_01855	serine-type peptidase activity	NA
UHGV-1456076_20	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-1456076_20	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-1456076_21	Structural annotation	PF11550, COG5437	NA	NA
UHGV-1456076_24	PHROG	phrog_11324	nucleotide kinase	other
UHGV-1456076_24	UniRef90	UniRef90_UPI001C5EE984	NA	NA
UHGV-1456076_24	eggNOG-mapper	1458670.W8NNR2_9CAUD	NA	NA
UHGV-1456076_24	Pfam	PF11753	NA	DUF3310
UHGV-1456076_27	UniRef90	UniRef90_A0A095Z5K4	HU-HIG domain-containing protein	NA
UHGV-1456076_27	Pfam	PF18291	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
UHGV-1456076_27	Structural annotation	PF18291, MF_00380, TIGR01201, COG0776	NA	NA
UHGV-1456076_30	PHROG	phrog_19572	NA	unknown function
UHGV-1456076_30	UniRef90	UniRef90_UPI001C5D245C	NA	NA
UHGV-1456076_30	eggNOG-mapper	1227276.HMPREF9148_01119	NA	NA
UHGV-1456076_30	Pfam	PF14902	NA	DUF4494
UHGV-1456076_30	Structural annotation	PF14902	NA	NA
UHGV-1456076_31	PHROG	phrog_625	NA	unknown function
UHGV-1456076_31	UniRef90	UniRef90_UPI001EEB5C9F	ASCH domain-containing protein	NA
UHGV-1456076_31	eggNOG-mapper	1380384.JADN01000003_gene688	NA	NA
UHGV-1456076_31	Structural annotation	PF04322, NF003443	NA	NA
UHGV-1456076_34	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1456076_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1456076_34	UniRef90	UniRef90_A0A096AV76	PAPS_reduct domain-containing protein	NA
UHGV-1456076_34	eggNOG-mapper	1236504.HMPREF2132_11380	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1456076_34	PADLOC	SspD_00001	SspD	SSP
UHGV-1456076_34	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1456076_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1456076_34	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1456076_35	PHROG	phrog_874	NA	unknown function
UHGV-1456076_35	eggNOG-mapper	1122981.AUME01000026_gene534	NA	NA
UHGV-1456076_35	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1456076_37	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1456076_37	UniRef90	UniRef90_A0A095Z6H0	MazG domain-containing protein	NA
UHGV-1456076_37	eggNOG-mapper	1236504.HMPREF2132_01780	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1456076_37	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1456076_37	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1456076_37	Structural annotation	TIGR03188, COG1694	NA	NA
UHGV-1456076_38	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1456076_38	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1456076_38	UniRef90	UniRef90_A0A348JCQ4	Putative flavin-dependent thymidylate synthase	NA
UHGV-1456076_38	eggNOG-mapper	1236504.HMPREF2132_01775	thymidylate synthase (FAD) activity	NA
UHGV-1456076_38	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1456076_38	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1456076_38	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1456076_40	PHROG	phrog_14787	NA	unknown function
UHGV-1456076_40	UniRef90	UniRef90_UPI001C5D62C5	PriCT-2 domain-containing protein	NA
UHGV-1456076_40	eggNOG-mapper	1236504.HMPREF2132_01765	Primase C terminal 2 (PriCT-2)	NA
UHGV-1456076_40	PADLOC	drt-cluster64	DRT	DRT
UHGV-1456076_40	Pfam	PF08800	BT4734-like, N-terminal domain	BT4734-like_N
UHGV-1456076_40	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1456076_40	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1456076_40	Structural annotation	PF08800, PF08707, NF040562	NA	NA
UHGV-1456076_44	Structural annotation	PF06141	NA	NA
UHGV-1456076_48	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1456076_48	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1456076_48	UniRef90	UniRef90_A0A2L2WNE7	Cytosine-specific methyltransferase	NA
UHGV-1456076_48	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-1456076_48	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1456076_48	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1456076_48	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1456076_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1456076_49	UniRef90	UniRef90_A0A095Z5J4	HU-HIG domain-containing protein	NA
UHGV-1456076_49	Pfam	PF18291	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
UHGV-1456076_52	UniRef90	UniRef90_UPI001BA98CED	NA	NA
UHGV-1456076_53	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1456076_53	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1456076_53	UniRef90	UniRef90_A0A0H5PZV9	DNA_pol3_beta_3 domain-containing protein	NA
UHGV-1456076_53	eggNOG-mapper	1236504.HMPREF2132_01710	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1456076_53	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1456076_53	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1456076_53	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-1456076_53	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1456076_53	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1456076_55	UniRef90	UniRef90_A0A096AGU9	FHA domain-containing protein	NA
UHGV-1456076_55	eggNOG-mapper	1236504.HMPREF2132_01700	DNA primase activity	NA
UHGV-1456076_55	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1456076_55	Structural annotation	PF05272, PF01807, MF_00974, MF_00016, NF005477, COG3378, COG0358	NA	NA
UHGV-1456076_56	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1456076_56	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1456076_56	UniRef90	UniRef90_UPI001C5FAD45	DNA adenine methylase	NA
UHGV-1456076_56	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1456076_56	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1456076_56	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-1456076_57	PHROG	phrog_255	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1456076_57	UniRef90	UniRef90_A0A095Z5C3	NA	NA
UHGV-1456076_57	eggNOG-mapper	1236504.HMPREF2132_01690	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-1456076_57	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-1456076_57	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1456076_57	Structural annotation	PF16473, MF_00157, TIGR01298, COG5018	NA	NA
UHGV-1456076_60	Structural annotation	NF041951, COG3655	NA	NA
UHGV-1456076_61	PHROG	phrog_25337	tail length tape measure protein	tail
UHGV-1456076_61	UniRef90	UniRef90_A0A2L2WS53	PhageMin_Tail domain-containing protein	NA
UHGV-1456076_61	eggNOG-mapper	1236504.HMPREF2132_01670	tail tape measure protein, TP901 family	NA
UHGV-1456076_61	COG	COG5283	Phage-related tail protein	NA
UHGV-1456076_61	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1456076_65	UniRef90	UniRef90_A0A096AGU1	Rep_3 domain-containing protein	NA
UHGV-1456076_65	eggNOG-mapper	1122981.AUME01000008_gene1231	Initiator RepB protein	NA
UHGV-1456076_65	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1456076_66	Structural annotation	PF07878, COG3905	NA	NA
UHGV-1456076_67	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1456076_67	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1456076_67	UniRef90	UniRef90_A0A095Z6L5	AAA_31 domain-containing protein	NA
UHGV-1456076_67	eggNOG-mapper	1236504.HMPREF2132_02105	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-1456076_67	Pfam	PF13614	AAA domain	AAA_31
UHGV-1456076_67	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1456076_67	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1456076_75	UniRef90	UniRef90_D7NCB7	Chloride intracellular channel protein 5	NA
UHGV-1456076_77	UniRef90	UniRef90_A0A095Z5H5	LPD29 domain-containing protein	NA
UHGV-1456076_77	eggNOG-mapper	1236504.HMPREF2132_02035	NA	NA
UHGV-1456076_77	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-1456076_78	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-1456076_78	UniRef90	UniRef90_UPI001C5D7CF9	antirestriction protein ArdA	NA
UHGV-1456076_78	eggNOG-mapper	1236504.HMPREF2132_02030	Antirestriction protein (ArdA)	NA
UHGV-1456076_78	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-1456076_78	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-1456076_78	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-1456076_78	Structural annotation	PF07275, COG4734	NA	NA
UHGV-1456076_82	eggNOG-mapper	1268240.ATFI01000007_gene423	Bacterial periplasmic substrate-binding proteins	NA
UHGV-1456076_82	COG	COG0834	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	NA
UHGV-1456076_83	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1456076_83	UniRef90	UniRef90_UPI001C5DE118	helix-turn-helix transcriptional regulator	NA
UHGV-1456076_83	eggNOG-mapper	1177928.TH2_18596	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1456076_83	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1456076_83	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1456076_85	Structural annotation	PF09565, NF010492, COG3886	NA	NA
UHGV-1456076_86	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1456076_86	PHROG	phrog_1	integrase	integration and excision
UHGV-1456076_86	UniRef90	UniRef90_A0A8B2AW39	Site-specific integrase	NA
UHGV-1456076_86	eggNOG-mapper	563008.HMPREF0665_02314	Belongs to the 'phage' integrase family	NA
UHGV-1456076_86	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1456076_86	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1456076_86	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1456076_86	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA