UHGV-1456379

Genome information

Genome length 46,167 bps

CDS count 62

Completeness 99.17% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-1456379
vOTU ID	vOTU-013305
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0298270
BioSample	SAMEA2155953
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.17% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.79
Jumbo phage	No

Genome content
Genome length	46,167 bps
GC content	45.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.71%
Average CDS length	678.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1456379_1	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1456379_1	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-1456379_2	PHROG	phrog_10475	endolysin	lysis
UHGV-1456379_2	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-1456379_2	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-1456379_2	Structural annotation	PF01464, COG0741	NA	NA
UHGV-1456379_3	PHROG	phrog_9880	NA	unknown function
UHGV-1456379_3	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-1456379_3	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-1456379_3	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1456379_4	PHROG	phrog_1640	tail protein	tail
UHGV-1456379_4	eggNOG-mapper	1123288.SOV_1c10770	Right handed beta helix region	NA
UHGV-1456379_4	COG	COG5434	Polygalacturonase	NA
UHGV-1456379_4	Structural annotation	PF03906	NA	NA
UHGV-1456379_5	Structural annotation	PF08948	NA	NA
UHGV-1456379_6	PHROG	phrog_1141	tail fiber protein	tail
UHGV-1456379_6	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-1456379_6	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-1456379_6	Pfam	PF14301	NA	DUF4376
UHGV-1456379_6	Structural annotation	PF14301	NA	NA
UHGV-1456379_7	PHROG	phrog_4105	NA	unknown function
UHGV-1456379_7	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-1456379_9	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-1456379_9	Structural annotation	PF21277	NA	NA
UHGV-1456379_10	PHROG	phrog_32732	NA	unknown function
UHGV-1456379_10	UniRef90	UniRef90_A0A8J6M6I8	NA	NA
UHGV-1456379_10	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-1456379_10	Pfam	PF14359	NA	DUF4406
UHGV-1456379_10	dbAPIS	APIS070	NA	NA
UHGV-1456379_13	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-1456379_13	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1456379_13	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1456379_13	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-1456379_14	PHROG	phrog_21718	NA	unknown function
UHGV-1456379_15	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-1456379_16	PHROG	phrog_16490	NA	unknown function
UHGV-1456379_16	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-1456379_17	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1456379_18	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1456379_18	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1456379_19	KOfam	K14059	int; integrase	NA
UHGV-1456379_19	PHROG	phrog_1	integrase	integration and excision
UHGV-1456379_19	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-1456379_19	eggNOG-mapper	1123250.KB908381_gene1631	Belongs to the 'phage' integrase family	NA
UHGV-1456379_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1456379_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1456379_19	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1456379_21	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1456379_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1456379_21	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-1456379_21	eggNOG-mapper	1151292.QEW_0725	DNA-binding helix-turn-helix protein	NA
UHGV-1456379_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1456379_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1456379_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1456379_23	PHROG	phrog_6058	NA	unknown function
UHGV-1456379_23	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-1456379_23	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-1456379_23	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1456379_24	Structural annotation	NF041909	NA	NA
UHGV-1456379_25	PHROG	phrog_14367	NA	unknown function
UHGV-1456379_25	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-1456379_25	Pfam	PF01476	LysM domain	LysM
UHGV-1456379_25	COG	COG1388	LysM repeat	NA
UHGV-1456379_25	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-1456379_27	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1456379_27	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-1456379_27	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-1456379_27	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1456379_27	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1456379_27	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1456379_27	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1456379_28	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-1456379_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1456379_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1456379_28	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1456379_29	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1456379_29	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1456379_29	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-1456379_29	eggNOG-mapper	1234664.AMRO01000024_gene1791	RecT family	NA
UHGV-1456379_29	Pfam	PF03837	RecT family	RecT
UHGV-1456379_29	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1456379_29	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1456379_29	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1456379_31	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1456379_31	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-1456379_31	eggNOG-mapper	1211817.CCAT010000007_gene1058	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1456379_31	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1456379_31	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1456379_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1456379_31	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-1456379_35	PHROG	phrog_10714	NA	unknown function
UHGV-1456379_35	Structural annotation	PF21173	NA	NA
UHGV-1456379_36	PHROG	phrog_3878	NA	unknown function
UHGV-1456379_37	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-1456379_38	PHROG	phrog_2776	NA	unknown function
UHGV-1456379_38	UniRef90	UniRef90_UPI001899258E	MmcB family DNA repair protein	NA
UHGV-1456379_38	eggNOG-mapper	266265.Bxe_A3083	NA	NA
UHGV-1456379_38	Pfam	PF06319	DNA repair protein MmcB-like	MmcB-like
UHGV-1456379_38	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1456379_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1456379_42	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1456379_42	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1456379_42	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-1456379_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1456379_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1456379_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1456379_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1456379_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1456379_43	UniRef90	UniRef90_R6WGR4	Single-stranded DNA-binding protein	NA
UHGV-1456379_43	eggNOG-mapper	546268.NEISUBOT_05135	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1456379_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1456379_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1456379_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1456379_43	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-1456379_48	PHROG	phrog_15863	NA	unknown function
UHGV-1456379_48	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-1456379_48	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-1456379_48	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-1456379_50	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-1456379_50	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-1456379_50	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-1456379_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1456379_52	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1456379_52	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1456379_52	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-1456379_52	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1456379_52	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1456379_52	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1456379_54	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1456379_54	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-1456379_54	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-1456379_54	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1456379_54	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1456379_55	PHROG	phrog_528	NA	unknown function
UHGV-1456379_55	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-1456379_56	PHROG	phrog_458	protease	other
UHGV-1456379_56	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-1456379_57	PHROG	phrog_212	major head protein	head and packaging
UHGV-1456379_57	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-1456379_57	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-1456379_57	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1456379_57	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1456379_58	PHROG	phrog_427	NA	unknown function
UHGV-1456379_58	Structural annotation	PF21190	NA	NA
UHGV-1456379_59	PHROG	phrog_394	tail protein	tail
UHGV-1456379_59	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-1456379_59	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-1456379_59	Structural annotation	PF17212	NA	NA
UHGV-1456379_60	PHROG	phrog_376	tail protein	tail
UHGV-1456379_60	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-1456379_60	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-1456379_60	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1456379_61	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1456379_61	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA