UHGV-1456579

Genome information

vOTU vOTU-061905

Genome length 44,071 bps

CDS count 79

Completeness 99.45% (high-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-1456579
vOTU ID	vOTU-061905
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0289070
BioSample	SAMEA4545538
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.45% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.92
Jumbo phage	No

Genome content
Genome length	44,071 bps
GC content	51.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	85.78%
Average CDS length	482.17 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1456579_1	UniRef90	UniRef90_R5EEH6	Helix-turn-helix domain protein	NA
UHGV-1456579_1	eggNOG-mapper	663278.Ethha_2377	sequence-specific DNA binding	NA
UHGV-1456579_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1456579_1	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-1456579_3	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-1456579_8	PHROG	phrog_14970	NA	unknown function
UHGV-1456579_8	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-1456579_8	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-1456579_8	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1456579_8	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1456579_8	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1456579_9	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1456579_9	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-1456579_9	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1456579_9	Structural annotation	PF05772	NA	NA
UHGV-1456579_10	UniRef90	UniRef90_UPI001D05CADB	HNH endonuclease	NA
UHGV-1456579_10	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-1456579_10	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-1456579_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1456579_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1456579_11	UniRef90	UniRef90_UPI001958E09C	single-stranded DNA-binding protein	NA
UHGV-1456579_11	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-1456579_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1456579_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1456579_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1456579_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1456579_11	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1456579_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1456579_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1456579_12	UniRef90	UniRef90_A0A7G9WF80	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1456579_12	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-1456579_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1456579_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1456579_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1456579_13	PHROG	phrog_4973	NA	unknown function
UHGV-1456579_13	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-1456579_13	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-1456579_13	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1456579_13	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-1456579_14	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-1456579_14	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-1456579_14	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-1456579_14	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1456579_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1456579_14	Structural annotation	PF14297	NA	NA
UHGV-1456579_16	eggNOG-mapper	476272.RUMHYD_03338	NA	NA
UHGV-1456579_17	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1456579_17	UniRef90	UniRef90_UPI000E6A87D3	NUMOD4 domain-containing protein	NA
UHGV-1456579_17	eggNOG-mapper	696281.Desru_3571	NUMOD4 domain protein	NA
UHGV-1456579_17	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1456579_17	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1456579_17	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1456579_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1456579_17	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1456579_19	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1456579_19	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1456579_19	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1456579_19	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1456579_19	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1456579_20	PHROG	phrog_3136	NA	unknown function
UHGV-1456579_20	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1456579_20	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1456579_20	Pfam	PF04266	ASCH domain	ASCH
UHGV-1456579_20	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1456579_20	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1456579_22	PHROG	phrog_37916	NA	unknown function
UHGV-1456579_23	PHROG	phrog_924	NA	unknown function
UHGV-1456579_23	UniRef90	UniRef90_UPI001873F304	NA	NA
UHGV-1456579_23	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-1456579_23	Pfam	PF04448	NA	DUF551
UHGV-1456579_31	PHROG	phrog_3972	NA	unknown function
UHGV-1456579_31	eggNOG-mapper	1158612.I580_01895	NA	NA
UHGV-1456579_31	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-1456579_32	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1456579_32	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-1456579_32	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-1456579_32	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1456579_32	Structural annotation	PF16677	NA	NA
UHGV-1456579_37	UniRef90	UniRef90_A0A7C6Y3R2	Helix-turn-helix domain-containing protein	NA
UHGV-1456579_37	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-1456579_40	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1456579_40	Structural annotation	PF13240	NA	NA
UHGV-1456579_41	PHROG	phrog_1233	NA	unknown function
UHGV-1456579_41	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-1456579_42	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1456579_42	UniRef90	UniRef90_UPI0018A0C9C4	phage terminase large subunit	NA
UHGV-1456579_42	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-1456579_42	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1456579_42	COG	COG5410	NA	NA
UHGV-1456579_42	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1456579_43	UniRef90	UniRef90_A0A845R620	CopG family transcriptional regulator	NA
UHGV-1456579_43	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-1456579_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1456579_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1456579_44	UniRef90	UniRef90_D9SWH3	Prophage antirepressor	NA
UHGV-1456579_44	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-1456579_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1456579_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1456579_44	COG	COG3617	Prophage antirepressor	NA
UHGV-1456579_44	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1456579_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-1456579_46	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-1456579_46	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1456579_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1456579_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1456579_49	PHROG	phrog_247	major head protein	head and packaging
UHGV-1456579_49	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-1456579_49	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-1456579_49	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1456579_49	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1456579_51	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-1456579_51	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-1456579_51	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1456579_51	Structural annotation	TIGR01560	NA	NA
UHGV-1456579_52	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-1456579_53	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1456579_54	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1456579_55	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1456579_55	UniRef90	UniRef90_U3PCR9	GIY-YIG domain-containing protein	NA
UHGV-1456579_55	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-1456579_55	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-1456579_56	PHROG	phrog_158	major tail protein	tail
UHGV-1456579_56	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-1456579_56	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-1456579_56	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1456579_57	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-1456579_57	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-1456579_57	Pfam	PF16478	NA	DUF5055
UHGV-1456579_57	Structural annotation	PF16478	NA	NA
UHGV-1456579_58	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-1456579_59	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1456579_59	UniRef90	UniRef90_R6DYC9	Phage-related protein-like protein	NA
UHGV-1456579_59	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1456579_59	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1456579_60	PHROG	phrog_1194	NA	unknown function
UHGV-1456579_60	eggNOG-mapper	702450.CUW_0546	NA	NA
UHGV-1456579_60	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1456579_61	PHROG	phrog_6616	tail protein	tail
UHGV-1456579_61	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-1456579_61	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-1456579_62	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-1456579_62	Structural annotation	NF041249, COG4379	NA	NA
UHGV-1456579_66	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-1456579_66	eggNOG-mapper	1123263.AUKY01000051_gene1069	cellulase activity	NA
UHGV-1456579_66	COG	COG4926	Phage-related protein	NA
UHGV-1456579_67	Structural annotation	PF14686, PF07210, PF21582, TIGR03000, TIGR04183, COG2512	NA	NA
UHGV-1456579_70	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-1456579_71	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1456579_71	PHROG	phrog_894	endolysin	lysis
UHGV-1456579_71	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-1456579_71	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-1456579_71	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1456579_71	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1456579_71	COG	COG3108	NA	NA
UHGV-1456579_71	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-1456579_72	PHROG	phrog_937	hemolysin	other
UHGV-1456579_72	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-1456579_73	PHROG	phrog_10091	holin	lysis
UHGV-1456579_73	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-1456579_73	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-1456579_73	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1456579_73	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1456579_73	COG	COG5546	NA	NA
UHGV-1456579_73	Structural annotation	COG5546	NA	NA
UHGV-1456579_74	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-1456579_78	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1456579_78	PHROG	phrog_95	integrase	integration and excision
UHGV-1456579_78	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-1456579_78	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-1456579_78	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1456579_78	Pfam	PF07508	Recombinase	Recombinase
UHGV-1456579_78	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1456579_78	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1456579_78	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1456579_79	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA