UHGV-1457389

Genome information

vOTU vOTU-020711

Genome length 51,676 bps

CDS count 88

Completeness 87.64% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1457389
vOTU ID	vOTU-020711
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0314506
BioSample	SAMEA3664732
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.46
Jumbo phage	No

Genome content
Genome length	51,676 bps
GC content	38.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	86.82%
Average CDS length	513.24 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1457389_1	KOfam	K14059	int; integrase	NA
UHGV-1457389_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1457389_1	UniRef90	UniRef90_R6CA87	Site-specific recombinase phage integrase family	NA
UHGV-1457389_1	eggNOG-mapper	411489.CLOL250_01458	Belongs to the 'phage' integrase family	NA
UHGV-1457389_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1457389_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1457389_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1457389_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1457389_2	PHROG	phrog_16129	excisionase	integration and excision
UHGV-1457389_2	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-1457389_2	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-1457389_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1457389_2	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-1457389_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1457389_2	Structural annotation	PF09035, TIGR01764, COG2771, COG3311	NA	NA
UHGV-1457389_3	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-1457389_4	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-1457389_4	AcrCatalog	cluster_47493	NA	NA
UHGV-1457389_5	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-1457389_6	PHROG	phrog_10714	NA	unknown function
UHGV-1457389_7	PHROG	phrog_8684	NA	unknown function
UHGV-1457389_7	UniRef90	UniRef90_A0A412RQU3	YopX domain-containing protein	NA
UHGV-1457389_7	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-1457389_7	Pfam	PF09643	YopX protein	YopX
UHGV-1457389_9	PHROG	phrog_9804	NA	unknown function
UHGV-1457389_9	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-1457389_9	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-1457389_9	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1457389_9	Structural annotation	PF11417	NA	NA
UHGV-1457389_10	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1457389_10	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-1457389_10	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-1457389_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1457389_11	Structural annotation	PF17388	NA	NA
UHGV-1457389_15	PHROG	phrog_19106	NA	unknown function
UHGV-1457389_15	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-1457389_15	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1457389_15	Structural annotation	TIGR01453	NA	NA
UHGV-1457389_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1457389_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1457389_16	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-1457389_16	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-1457389_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1457389_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1457389_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1457389_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1457389_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1457389_17	PHROG	phrog_8684	NA	unknown function
UHGV-1457389_17	UniRef90	UniRef90_A0A3R7C0X3	YopX domain-containing protein	NA
UHGV-1457389_17	eggNOG-mapper	1235794.C811_01545	NA	NA
UHGV-1457389_17	Pfam	PF09643	YopX protein	YopX
UHGV-1457389_17	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1457389_17	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1457389_19	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1457389_19	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-1457389_19	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-1457389_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1457389_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1457389_19	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1457389_23	PHROG	phrog_7711	NA	unknown function
UHGV-1457389_23	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-1457389_23	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-1457389_24	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1457389_24	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-1457389_24	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1457389_24	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1457389_24	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-1457389_25	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1457389_25	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-1457389_25	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-1457389_25	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1457389_25	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1457389_26	PHROG	phrog_9822	NA	unknown function
UHGV-1457389_27	PHROG	phrog_25456	NA	unknown function
UHGV-1457389_28	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1457389_28	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-1457389_28	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-1457389_28	Pfam	PF03837	RecT family	RecT
UHGV-1457389_28	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1457389_28	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1457389_28	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1457389_31	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1457389_31	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1457389_31	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-1457389_31	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-1457389_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1457389_31	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1457389_34	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-1457389_34	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-1457389_35	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1457389_35	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-1457389_35	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-1457389_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1457389_35	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1457389_35	COG	COG3617	Prophage antirepressor	NA
UHGV-1457389_35	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1457389_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1457389_36	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-1457389_36	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-1457389_36	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1457389_36	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1457389_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1457389_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1457389_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1457389_37	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-1457389_37	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-1457389_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1457389_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1457389_37	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1457389_38	PHROG	phrog_3845	NA	unknown function
UHGV-1457389_38	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-1457389_40	PHROG	phrog_806	NA	unknown function
UHGV-1457389_40	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-1457389_40	Pfam	PF11611	NA	DUF4352
UHGV-1457389_40	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-1457389_41	PHROG	phrog_3279	tail fiber protein	tail
UHGV-1457389_41	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-1457389_42	PHROG	phrog_6616	tail protein	tail
UHGV-1457389_42	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-1457389_42	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-1457389_42	Structural annotation	PF05113, NF033848, COG4926	NA	NA
UHGV-1457389_43	PHROG	phrog_1194	NA	unknown function
UHGV-1457389_43	eggNOG-mapper	86416.Clopa_0588	NA	NA
UHGV-1457389_43	Pfam	PF20458	NA	DUF6711
UHGV-1457389_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1457389_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1457389_44	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-1457389_44	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-1457389_44	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1457389_45	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1457389_45	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-1457389_45	eggNOG-mapper	1380384.JADN01000003_gene632	Intron encoded nuclease repeat motif	NA
UHGV-1457389_45	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1457389_45	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1457389_45	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-1457389_45	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-1457389_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1457389_46	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-1457389_46	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-1457389_46	COG	COG1511	NA	NA
UHGV-1457389_47	KOfam	K07273	acm; lysozyme	NA
UHGV-1457389_47	PHROG	phrog_291	endolysin	lysis
UHGV-1457389_47	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-1457389_47	eggNOG-mapper	397287.C807_01339	Glycosyl hydrolases family 25	NA
UHGV-1457389_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1457389_47	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1457389_47	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-1457389_50	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-1457389_50	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1457389_51	Structural annotation	PF05657	NA	NA
UHGV-1457389_52	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-1457389_52	AcrCatalog	cluster_24841	NA	NA
UHGV-1457389_53	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1457389_53	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1457389_54	PHROG	phrog_1129	holin	lysis
UHGV-1457389_54	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-1457389_54	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1457389_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1457389_54	Structural annotation	PF06946	NA	NA
UHGV-1457389_55	PHROG	phrog_1863	NA	unknown function
UHGV-1457389_55	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-1457389_56	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1457389_57	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-1457389_57	Structural annotation	PF21169	NA	NA
UHGV-1457389_58	PHROG	phrog_29	major head protein	head and packaging
UHGV-1457389_58	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-1457389_58	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-1457389_58	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1457389_58	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1457389_59	PHROG	phrog_909	major head protein	head and packaging
UHGV-1457389_59	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-1457389_60	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-1457389_61	PHROG	phrog_2662	portal protein	head and packaging
UHGV-1457389_61	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-1457389_61	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1457389_61	COG	COG2369	NA	NA
UHGV-1457389_61	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1457389_62	PHROG	phrog_64	portal protein	head and packaging
UHGV-1457389_62	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-1457389_62	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1457389_62	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1457389_62	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1457389_63	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1457389_63	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-1457389_63	Structural annotation	PF02996	NA	NA
UHGV-1457389_64	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1457389_64	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-1457389_64	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-1457389_64	COG	COG5410	NA	NA
UHGV-1457389_64	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1457389_65	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-1457389_65	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-1457389_65	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1457389_66	PHROG	phrog_2316	NA	unknown function
UHGV-1457389_66	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-1457389_66	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-1457389_66	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-1457389_72	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-1457389_76	UniRef90	UniRef90_A0A8D9PG44	Tax1-binding protein	NA
UHGV-1457389_78	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-1457389_78	Structural annotation	PF05225, COG2886	NA	NA
UHGV-1457389_79	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1457389_79	UniRef90	UniRef90_UPI00148DB0F2	DnaD domain protein	NA
UHGV-1457389_79	eggNOG-mapper	1029718.SFBM_0770	DnaD domain protein	NA
UHGV-1457389_79	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1457389_79	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-1457389_81	PHROG	phrog_236	nucleotide kinase	other
UHGV-1457389_81	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-1457389_81	eggNOG-mapper	1236504.HMPREF2132_11120	NA	NA
UHGV-1457389_81	Pfam	PF11753	NA	DUF3310
UHGV-1457389_81	Structural annotation	PF11753	NA	NA
UHGV-1457389_82	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-1457389_83	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-1457389_83	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1457389_86	PHROG	phrog_31631	NA	unknown function
UHGV-1457389_87	eggNOG-mapper	908337.HMPREF9257_0254	NA	NA