UHGV-1458403

Genome information

Genome length 44,013 bps

CDS count 64

Completeness 98.49% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-1458403
vOTU ID	vOTU-074462
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0288810
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.68
Jumbo phage	No

Genome content
Genome length	44,013 bps
GC content	40.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.25%
Average CDS length	628.78 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1458403_1	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1458403_1	UniRef90	UniRef90_UPI00156ECB0A	HNH endonuclease	NA
UHGV-1458403_1	eggNOG-mapper	1211817.CCAT010000007_gene1042	HNH endonuclease	NA
UHGV-1458403_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1458403_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1458403_1	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1458403_3	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1458403_3	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-1458403_3	eggNOG-mapper	86416.Clopa_0334	transposase activity	NA
UHGV-1458403_3	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1458403_3	Structural annotation	PF07141	NA	NA
UHGV-1458403_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1458403_4	PHROG	phrog_435	endolysin	lysis
UHGV-1458403_4	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1458403_4	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1458403_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1458403_4	Pfam	PF05036	SPOR domain	SPOR
UHGV-1458403_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1458403_4	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1458403_5	PHROG	phrog_1863	NA	unknown function
UHGV-1458403_5	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-1458403_6	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-1458403_8	UniRef90	UniRef90_R7F9V4	Putative RNA polymerase sigma factor sigma-F	NA
UHGV-1458403_8	eggNOG-mapper	1131462.DCF50_p1816	DNA-templated transcription, initiation	NA
UHGV-1458403_8	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1458403_8	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1458403_8	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-1458403_10	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1458403_10	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1458403_10	UniRef90	UniRef90_A0A1C7GAG0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1458403_10	eggNOG-mapper	397288.C806_04315	NA	NA
UHGV-1458403_10	Pfam	PF00692	dUTPase	dUTPase
UHGV-1458403_10	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1458403_10	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1458403_10	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1458403_11	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-1458403_11	PHROG	phrog_5131	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1458403_11	UniRef90	UniRef90_A0A7L7STC5	Thymidylate synthase	NA
UHGV-1458403_11	eggNOG-mapper	1408254.T458_24480	Thymidylate synthase	NA
UHGV-1458403_11	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-1458403_11	COG	COG0207	Thymidylate synthase	NA
UHGV-1458403_11	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-1458403_12	eggNOG-mapper	742735.HMPREF9467_00883	Belongs to the LOG family	NA
UHGV-1458403_12	COG	COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	NA
UHGV-1458403_12	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1458403_13	KOfam	K00568	ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]	NA
UHGV-1458403_13	PHROG	phrog_4752	tRNA methyltransferase	other
UHGV-1458403_13	UniRef90	UniRef90_UPI0011DC7D29	class I SAM-dependent methyltransferase	NA
UHGV-1458403_13	Pfam	PF13489	Methyltransferase domain	Methyltransf_23
UHGV-1458403_13	Structural annotation	PF03291, MF_02057, NF008264, COG2227	NA	NA
UHGV-1458403_14	PHROG	phrog_761	thymidylate kinase	other
UHGV-1458403_14	UniRef90	UniRef90_A0A658JBT8	dNK domain-containing protein	NA
UHGV-1458403_14	eggNOG-mapper	644281.MFS40622_1532	PFAM thymidylate kinase	NA
UHGV-1458403_14	Pfam	PF13238	AAA domain	AAA_18
UHGV-1458403_14	COG	COG0125	Thymidylate kinase	NA
UHGV-1458403_14	Structural annotation	PF01712, MF_00109, NF010553, COG1428	NA	NA
UHGV-1458403_16	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1458403_16	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1458403_16	UniRef90	UniRef90_A0A259V1C2	SF3 helicase domain-containing protein	NA
UHGV-1458403_16	eggNOG-mapper	1120985.AUMI01000018_gene2908	D5 N terminal like	NA
UHGV-1458403_16	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1458403_16	Pfam	PF19263	NA	DUF5906
UHGV-1458403_16	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1458403_16	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1458403_16	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-1458403_18	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1458403_18	UniRef90	UniRef90_A0A1G5G0M3	DNA polymerase	NA
UHGV-1458403_18	eggNOG-mapper	1280692.AUJL01000009_gene2997	DNA polymerase elongation subunit (Family B)	NA
UHGV-1458403_18	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1458403_18	Structural annotation	PF00136, MF_04100, NF004416, COG0417	NA	NA
UHGV-1458403_19	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1458403_19	UniRef90	UniRef90_A0A658K0A9	NA	NA
UHGV-1458403_19	eggNOG-mapper	742740.HMPREF9474_02367	NA	NA
UHGV-1458403_19	Structural annotation	PF05037	NA	NA
UHGV-1458403_21	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1458403_21	UniRef90	UniRef90_UPI0007C86507	AAA family ATPase	NA
UHGV-1458403_21	eggNOG-mapper	742740.HMPREF9474_02369	AAA domain	NA
UHGV-1458403_21	Pfam	PF13479	AAA domain	AAA_24
UHGV-1458403_21	Structural annotation	PF13479, TIGR01618, COG2087	NA	NA
UHGV-1458403_22	Structural annotation	PF08931	NA	NA
UHGV-1458403_24	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1458403_24	PHROG	phrog_5889	NA	unknown function
UHGV-1458403_24	UniRef90	UniRef90_UPI0012DEC7D6	HD family phosphohydrolase	NA
UHGV-1458403_24	eggNOG-mapper	742740.HMPREF9474_02372	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-1458403_24	Pfam	PF01966	HD domain	HD
UHGV-1458403_24	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1458403_24	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-1458403_25	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1458403_25	UniRef90	UniRef90_A0A415TAD1	VRR-NUC domain-containing protein	NA
UHGV-1458403_25	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-1458403_25	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-1458403_25	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-1458403_25	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-1458403_27	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1458403_27	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1458403_27	UniRef90	UniRef90_A0A259V1H1	Helicase ATP-binding domain-containing protein	NA
UHGV-1458403_27	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-1458403_27	PADLOC	DpdE_00003	DpdE	DPD
UHGV-1458403_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1458403_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1458403_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1458403_27	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-1458403_29	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1458403_31	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1458403_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1458403_31	UniRef90	UniRef90_UPI001E5286C8	helix-turn-helix domain-containing protein	NA
UHGV-1458403_31	eggNOG-mapper	332101.JIBU02000023_gene4733	Helix-turn-helix domain protein	NA
UHGV-1458403_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1458403_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1458403_31	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-1458403_32	KOfam	K14059	int; integrase	NA
UHGV-1458403_32	PHROG	phrog_1	integrase	integration and excision
UHGV-1458403_32	UniRef90	UniRef90_UPI001B2DB152	site-specific integrase	NA
UHGV-1458403_32	eggNOG-mapper	558169.AGAV01000001_gene3323	Phage integrase family	NA
UHGV-1458403_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1458403_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1458403_32	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1458403_34	PHROG	phrog_2268	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-1458403_34	UniRef90	UniRef90_A0A1T5K0V6	Antitoxin	NA
UHGV-1458403_34	eggNOG-mapper	767817.Desgi_4421	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-1458403_34	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-1458403_34	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-1458403_35	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-1458403_35	PHROG	phrog_2455	NA	unknown function
UHGV-1458403_35	UniRef90	UniRef90_A0A524FA23	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-1458403_35	eggNOG-mapper	221027.JO40_10260	RelE StbE family addiction module toxin	NA
UHGV-1458403_35	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-1458403_35	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-1458403_37	PHROG	phrog_421	NA	unknown function
UHGV-1458403_37	UniRef90	UniRef90_A0A7U9X7X4	NA	NA
UHGV-1458403_37	eggNOG-mapper	97139.C824_00143	NA	NA
UHGV-1458403_37	Pfam	PF10979	NA	DUF2786
UHGV-1458403_37	Structural annotation	PF10979	NA	NA
UHGV-1458403_39	eggNOG-mapper	93220.LV28_00030	NA	NA
UHGV-1458403_39	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1458403_43	eggNOG-mapper	311424.DhcVS_252	NA	NA
UHGV-1458403_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1458403_44	UniRef90	UniRef90_A0A1Y4J1N7	Transcriptional regulator	NA
UHGV-1458403_44	eggNOG-mapper	537007.BLAHAN_04265	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1458403_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1458403_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1458403_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1458403_45	PHROG	phrog_1220	head protein	head and packaging
UHGV-1458403_45	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-1458403_45	Pfam	PF05426	Alginate lyase	Alginate_lyase
UHGV-1458403_45	Structural annotation	PF16569, PF21567	NA	NA
UHGV-1458403_46	PHROG	phrog_538	minor tail protein	tail
UHGV-1458403_46	UniRef90	UniRef90_UPI0015712F8F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1458403_46	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1458403_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1458403_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1458403_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1458403_47	UniRef90	UniRef90_UPI001570DCE2	phage tail family protein	NA
UHGV-1458403_47	eggNOG-mapper	742733.HMPREF9469_05019	Phage tail protein	NA
UHGV-1458403_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1458403_47	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1458403_48	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1458403_48	PHROG	phrog_5218	NA	unknown function
UHGV-1458403_48	UniRef90	UniRef90_UPI00156DBBA7	phage tail tape measure protein	NA
UHGV-1458403_48	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-1458403_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1458403_48	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1458403_48	Structural annotation	PF10145, TIGR01760, NF006545, COG5280	NA	NA
UHGV-1458403_50	PHROG	phrog_88	major tail protein	tail
UHGV-1458403_50	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-1458403_50	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-1458403_50	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1458403_50	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1458403_51	Structural annotation	PF05657	NA	NA
UHGV-1458403_52	Structural annotation	TIGR01725	NA	NA
UHGV-1458403_53	PHROG	phrog_25	head closure Hc1	connector
UHGV-1458403_53	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-1458403_53	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-1458403_53	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1458403_53	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1458403_54	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-1458403_54	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-1458403_54	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1458403_55	UniRef90	UniRef90_A0A8G1TFU0	S-l_SbsC_C domain-containing protein	NA
UHGV-1458403_55	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-1458403_55	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1458403_55	Structural annotation	PF18316	NA	NA
UHGV-1458403_56	PHROG	phrog_10	major head protein	head and packaging
UHGV-1458403_56	UniRef90	UniRef90_UPI00156E5E69	phage major capsid protein	NA
UHGV-1458403_56	eggNOG-mapper	1536769.P40081_01075	Phage capsid family	NA
UHGV-1458403_56	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1458403_56	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1458403_56	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1458403_56	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1458403_57	KOfam	K06904	NA	NA
UHGV-1458403_57	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1458403_57	UniRef90	UniRef90_UPI00156EFB92	HK97 family phage prohead protease	NA
UHGV-1458403_57	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-1458403_57	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1458403_57	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1458403_57	COG	COG3740	Phage head maturation protease	NA
UHGV-1458403_57	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1458403_58	PHROG	phrog_12	portal protein	head and packaging
UHGV-1458403_58	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-1458403_58	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-1458403_58	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1458403_58	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1458403_58	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1458403_59	PHROG	phrog_32680	tail fiber protein	tail
UHGV-1458403_59	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-1458403_59	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1458403_62	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1458403_62	UniRef90	UniRef90_UPI00156FA9A2	terminase large subunit	NA
UHGV-1458403_62	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-1458403_62	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1458403_62	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1458403_62	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1458403_62	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1458403_63	UniRef90	UniRef90_A0A6S6XJ17	FHA domain-containing protein	NA
UHGV-1458403_63	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-1458403_64	PHROG	phrog_1066	NA	unknown function