UHGV-1459011

Genome information

Genome length 15,158 bps

CDS count 21

Completeness 51.94% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-1459011
vOTU ID	vOTU-035401
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0093601
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.78
Jumbo phage	No

Genome content
Genome length	15,158 bps
GC content	39.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	94.95%
Average CDS length	690.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1459011_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1459011_1	UniRef90	UniRef90_J5WFY5	PF07374 family protein	NA
UHGV-1459011_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1459011_1	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1459011_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1459011_2	UniRef90	UniRef90_A0A2V2GTI8	HNH endonuclease	NA
UHGV-1459011_2	eggNOG-mapper	411902.CLOBOL_03884	HNH endonuclease	NA
UHGV-1459011_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1459011_3	PHROG	phrog_13845	NA	unknown function
UHGV-1459011_3	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-1459011_3	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1459011_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1459011_4	UniRef90	UniRef90_A0A3D1WME8	Terminase large subunit	NA
UHGV-1459011_4	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-1459011_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1459011_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1459011_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1459011_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1459011_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-1459011_5	UniRef90	UniRef90_A0A1V5INC9	Phage portal protein	NA
UHGV-1459011_5	eggNOG-mapper	324057.Pjdr2_1541	Phage portal protein	NA
UHGV-1459011_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1459011_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1459011_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1459011_6	KOfam	K06904	NA	NA
UHGV-1459011_6	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1459011_6	UniRef90	UniRef90_A0A3B9G0S9	HK97 family phage prohead protease	NA
UHGV-1459011_6	eggNOG-mapper	1519439.JPJG01000037_gene953	Phage prohead protease, HK97 family	NA
UHGV-1459011_6	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1459011_6	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1459011_6	COG	COG3740	Phage head maturation protease	NA
UHGV-1459011_6	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1459011_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-1459011_7	UniRef90	UniRef90_UPI001958A6F5	phage major capsid protein	NA
UHGV-1459011_7	eggNOG-mapper	1297617.JPJD01000009_gene2879	Phage capsid family	NA
UHGV-1459011_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1459011_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1459011_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1459011_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1459011_8	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-1459011_8	Structural annotation	TIGR01560	NA	NA
UHGV-1459011_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1459011_9	eggNOG-mapper	1316408.HSISM1_1057	Phage head-tail joining protein	NA
UHGV-1459011_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1459011_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1459011_10	UniRef90	UniRef90_UPI00195EB731	HK97 gp10 family phage protein	NA
UHGV-1459011_10	eggNOG-mapper	386043.lwe1229	NA	NA
UHGV-1459011_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1459011_11	eggNOG-mapper	644007.C5J968_9CAUD	aminopeptidase activity	NA
UHGV-1459011_11	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1459011_12	PHROG	phrog_88	major tail protein	tail
UHGV-1459011_12	UniRef90	UniRef90_U7UEE8	Phage major tail protein, phi13 family	NA
UHGV-1459011_12	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-1459011_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1459011_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1459011_13	PHROG	phrog_709	NA	unknown function
UHGV-1459011_13	eggNOG-mapper	1111134.HMPREF1253_0376	NA	NA
UHGV-1459011_13	Structural annotation	PF11836	NA	NA
UHGV-1459011_14	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1459011_14	UniRef90	UniRef90_A0A496UQP9	Phage tail tape measure protein	NA
UHGV-1459011_14	eggNOG-mapper	1042156.CXIVA_01700	tape measure	NA
UHGV-1459011_14	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1459011_15	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-1459011_15	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1459011_16	PHROG	phrog_538	minor tail protein	tail
UHGV-1459011_16	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1459011_16	eggNOG-mapper	411468.CLOSCI_00276	NA	NA
UHGV-1459011_16	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1459011_16	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1459011_17	PHROG	phrog_9994	NA	unknown function
UHGV-1459011_19	PHROG	phrog_1009	NA	unknown function
UHGV-1459011_20	PHROG	phrog_1129	holin	lysis
UHGV-1459011_20	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-1459011_20	eggNOG-mapper	1158601.I585_01143	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1459011_20	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1459011_20	Structural annotation	PF06946	NA	NA
UHGV-1459011_21	KOfam	K00689	E2.4.1.5; dextransucrase [EC:2.4.1.5]	NA
UHGV-1459011_21	PHROG	phrog_7854	endolysin	lysis
UHGV-1459011_21	eggNOG-mapper	665950.HMPREF1025_01328	CHAP domain	NA
UHGV-1459011_21	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1459011_21	COG	COG1388	LysM repeat	NA
UHGV-1459011_21	Structural annotation	PF19127, PF05382, TIGR04035, NF008096, COG5263, COG3942	NA	NA