UHGV-1459494

Genome information

Genome length 24,069 bps

CDS count 39

Completeness 51.72% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-1459494
vOTU ID	vOTU-035409
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0176027
BioSample	SAMN00035453
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.6
Jumbo phage	No

Genome content
Genome length	24,069 bps
GC content	51.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	91.62%
Average CDS length	568.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1459494_3	PHROG	phrog_156	portal protein	head and packaging
UHGV-1459494_3	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-1459494_3	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1459494_4	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-1459494_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1459494_4	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-1459494_4	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-1459494_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-1459494_4	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1459494_5	PHROG	phrog_3064	terminase	head and packaging
UHGV-1459494_5	UniRef90	UniRef90_A0A2I7QK24	Coil containing protein (Fragment)	NA
UHGV-1459494_9	PHROG	phrog_918	NA	unknown function
UHGV-1459494_9	UniRef90	UniRef90_UPI001D020797	NA	NA
UHGV-1459494_9	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-1459494_9	Pfam	PF19791	NA	DUF6275
UHGV-1459494_9	Structural annotation	PF19791	NA	NA
UHGV-1459494_14	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1459494_14	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-1459494_14	eggNOG-mapper	702438.HMPREF9431_00759	HNH endonuclease	NA
UHGV-1459494_14	PADLOC	ZorE2_00001	HNH endonuclease	Zorya
UHGV-1459494_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1459494_14	Structural annotation	NF008448	NA	NA
UHGV-1459494_16	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1459494_16	UniRef90	UniRef90_A0A373PYN5	NAD(P)-dependent oxidoreductase	NA
UHGV-1459494_16	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-1459494_16	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1459494_16	Structural annotation	PF03848, MF_00341, NF012219, COG1255	NA	NA
UHGV-1459494_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1459494_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1459494_17	UniRef90	UniRef90_A0A2Z4GUI8	Site-specific DNA methylase	NA
UHGV-1459494_17	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1459494_17	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-1459494_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1459494_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1459494_17	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1459494_20	PHROG	phrog_1029	NA	unknown function
UHGV-1459494_20	eggNOG-mapper	1519439.JPJG01000059_gene1911	NA	NA
UHGV-1459494_20	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1459494_21	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1459494_21	UniRef90	UniRef90_UPI0011581F2E	replication terminator protein	NA
UHGV-1459494_21	eggNOG-mapper	562743.JH976434_gene1044	NA	NA
UHGV-1459494_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1459494_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1459494_22	UniRef90	UniRef90_A0A2V2ET02	Single-stranded DNA-binding protein	NA
UHGV-1459494_22	eggNOG-mapper	1121423.JONT01000003_gene1118	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1459494_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1459494_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1459494_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1459494_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1459494_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1459494_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1459494_23	PHROG	phrog_26861	NA	unknown function
UHGV-1459494_23	UniRef90	UniRef90_R6WJP8	Single-stranded DNA-binding protein	NA
UHGV-1459494_23	eggNOG-mapper	1304880.JAGB01000001_gene702	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1459494_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1459494_23	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-1459494_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1459494_23	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1459494_24	eggNOG-mapper	742817.HMPREF9449_01803	NA	NA
UHGV-1459494_24	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-1459494_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1459494_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1459494_25	UniRef90	UniRef90_A0A1I0CMR7	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-1459494_25	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-1459494_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1459494_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1459494_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1459494_26	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1459494_26	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1459494_26	UniRef90	UniRef90_UPI000F53F699	recombinase RecT	NA
UHGV-1459494_26	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-1459494_26	Pfam	PF03837	RecT family	RecT
UHGV-1459494_26	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1459494_26	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1459494_26	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1459494_27	PHROG	phrog_674	NA	unknown function
UHGV-1459494_27	UniRef90	UniRef90_A0A4P9C8L7	NA	NA
UHGV-1459494_27	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-1459494_27	Pfam	PF07083	NA	DUF1351
UHGV-1459494_27	Structural annotation	PF07083	NA	NA
UHGV-1459494_28	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1459494_28	UniRef90	UniRef90_A0A1W1YQ31	Putative phage-type endonuclease	NA
UHGV-1459494_28	eggNOG-mapper	1121441.AUCX01000014_gene536	YqaJ-like viral recombinase domain	NA
UHGV-1459494_28	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1459494_28	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1459494_28	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1459494_28	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1459494_33	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1459494_34	KOfam	K07497	K07497; putative transposase	NA
UHGV-1459494_34	PHROG	phrog_8463	transposase	integration and excision
UHGV-1459494_34	UniRef90	UniRef90_A0A355V3R3	IS481 family transposase	NA
UHGV-1459494_34	eggNOG-mapper	1123250.KB908380_gene745	COG2801 Transposase and inactivated derivatives	NA
UHGV-1459494_34	Pfam	PF00665	Integrase core domain	rve
UHGV-1459494_34	Pfam	PF13683	Integrase core domain	rve_3
UHGV-1459494_34	COG	COG2801	Transposase InsO and inactivated derivatives	NA