UHGV-1459862

Genome information

Genome length 20,348 bps

CDS count 26

Completeness 50.97% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-1459862
vOTU ID	vOTU-025349
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-4364852
BioSample	SAMEA3136701
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.21
Jumbo phage	No

Genome content
Genome length	20,348 bps
GC content	49.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	95.50%
Average CDS length	749.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1459862_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1459862_1	UniRef90	UniRef90_UPI0012EC733D	terminase large subunit	NA
UHGV-1459862_1	eggNOG-mapper	517433.PanABDRAFT_0988	Phage Terminase	NA
UHGV-1459862_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1459862_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1459862_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1459862_1	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1459862_2	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1459862_2	eggNOG-mapper	1440052.EAKF1_ch0465c	NA	NA
UHGV-1459862_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1459862_3	UniRef90	UniRef90_A0A7X8P3R2	Phage portal protein	NA
UHGV-1459862_3	eggNOG-mapper	640513.Entas_3080	TIGRFAM Phage portal protein, HK97	NA
UHGV-1459862_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1459862_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1459862_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1459862_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1459862_4	KOfam	K06904	NA	NA
UHGV-1459862_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1459862_4	UniRef90	UniRef90_UPI000D610935	HK97 family phage prohead protease	NA
UHGV-1459862_4	eggNOG-mapper	640513.Entas_3079	Caudovirus prohead serine protease	NA
UHGV-1459862_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1459862_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1459862_4	COG	COG3740	Phage head maturation protease	NA
UHGV-1459862_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1459862_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1459862_5	UniRef90	UniRef90_E6WKD7	Phage major capsid protein, HK97 family	NA
UHGV-1459862_5	eggNOG-mapper	640513.Entas_3078	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-1459862_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1459862_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1459862_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1459862_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1459862_6	PHROG	phrog_21989	NA	unknown function
UHGV-1459862_6	UniRef90	UniRef90_A0A2R4PH62	Phage-like protein	NA
UHGV-1459862_6	eggNOG-mapper	754331.AEME01000001_gene206	NA	NA
UHGV-1459862_7	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1459862_7	UniRef90	UniRef90_A0A241Q8L5	Phage gp6-like head-tail connector protein	NA
UHGV-1459862_7	eggNOG-mapper	640513.Entas_3076	Phage gp6-like head-tail connector protein	NA
UHGV-1459862_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1459862_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1459862_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1459862_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-1459862_8	UniRef90	UniRef90_UPI000B49D757	phage head closure protein	NA
UHGV-1459862_8	eggNOG-mapper	399742.Ent638_2233	head-tail adaptor	NA
UHGV-1459862_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1459862_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1459862_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1459862_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1459862_9	PHROG	phrog_23409	NA	unknown function
UHGV-1459862_9	UniRef90	UniRef90_UPI000F680D9C	HK97 gp10 family phage protein	NA
UHGV-1459862_9	eggNOG-mapper	35703.DQ02_21670	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1459862_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1459862_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1459862_9	Structural annotation	TIGR01725	NA	NA
UHGV-1459862_10	PHROG	phrog_347	tail terminator	connector
UHGV-1459862_10	UniRef90	UniRef90_A0A3W1D7H9	NA	NA
UHGV-1459862_10	eggNOG-mapper	35703.DQ02_21665	Structural component (Phage or Prophage Related)	NA
UHGV-1459862_10	Structural annotation	PF11367	NA	NA
UHGV-1459862_11	PHROG	phrog_158	major tail protein	tail
UHGV-1459862_11	UniRef90	UniRef90_A0A0J1PMV8	Ig-like domain-containing protein	NA
UHGV-1459862_11	eggNOG-mapper	35703.DQ02_21660	NA	NA
UHGV-1459862_11	Pfam	PF13927	Immunoglobulin domain	Ig_3
UHGV-1459862_11	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-1459862_12	PHROG	phrog_344	tail assembly chaperone	tail
UHGV-1459862_12	UniRef90	UniRef90_A0A8I0G4U4	Phage tail protein	NA
UHGV-1459862_12	eggNOG-mapper	1399774.JDWH01000036_gene4055	tail assembly chaperone	NA
UHGV-1459862_12	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-1459862_12	Structural annotation	PF06222	NA	NA
UHGV-1459862_13	PHROG	phrog_14766	tail protein	tail
UHGV-1459862_13	UniRef90	UniRef90_A0A6M1DMD2	NA	NA
UHGV-1459862_13	eggNOG-mapper	1399774.JDWH01000036_gene4054	NA	NA
UHGV-1459862_13	Pfam	PF13227	NA	DUF4035
UHGV-1459862_13	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-1459862_14	PHROG	phrog_5031	NA	unknown function
UHGV-1459862_14	UniRef90	UniRef90_Q9MCS4	Gp15	NA
UHGV-1459862_14	eggNOG-mapper	1147157.K7PH36_9CAUD	YebO-like protein	NA
UHGV-1459862_14	Pfam	PF13974	YebO-like protein	YebO
UHGV-1459862_15	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-1459862_15	UniRef90	UniRef90_A0A8I0G9W9	Phage tail tape measure protein	NA
UHGV-1459862_15	eggNOG-mapper	1147147.K7P6X5_9CAUD	peptidoglycan catabolic process	NA
UHGV-1459862_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1459862_15	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-1459862_15	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-1459862_15	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-1459862_15	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-1459862_16	PHROG	phrog_11851	NA	unknown function
UHGV-1459862_17	PHROG	phrog_6806	NA	unknown function
UHGV-1459862_18	PHROG	phrog_1302	distal tail protein	tail
UHGV-1459862_18	UniRef90	UniRef90_A0A0J8Y927	NA	NA
UHGV-1459862_18	eggNOG-mapper	35703.DQ02_21635	NA	NA
UHGV-1459862_18	Structural annotation	PF09343, TIGR02217, COG4718	NA	NA
UHGV-1459862_19	PHROG	phrog_2048	tail protein	tail
UHGV-1459862_19	UniRef90	UniRef90_M1K743	NA	NA
UHGV-1459862_19	eggNOG-mapper	1399774.JDWH01000035_gene2232	NA	NA
UHGV-1459862_19	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-1459862_20	PHROG	phrog_2134	NA	unknown function
UHGV-1459862_20	UniRef90	UniRef90_A0A0J8VLI5	NA	NA
UHGV-1459862_20	eggNOG-mapper	1218086.BBNB01000014_gene2050	NA	NA
UHGV-1459862_20	Structural annotation	PF00877, NF008096, COG3738	NA	NA
UHGV-1459862_21	PHROG	phrog_5616	tail fiber protein	tail
UHGV-1459862_21	UniRef90	UniRef90_A0A5A8JZX9	NA	NA
UHGV-1459862_21	eggNOG-mapper	1218086.BBNB01000014_gene2049	COG4733 Phage-related protein, tail component	NA
UHGV-1459862_21	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1459862_21	Pfam	PF09327	NA	DUF1983
UHGV-1459862_21	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1459862_21	Structural annotation	PF13550, PF09327, PF16323, PF21605, MF_04116, NF040662, NF010681, COG4733	NA	NA
UHGV-1459862_22	PHROG	phrog_1265	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1459862_22	UniRef90	UniRef90_UPI0018667F2E	NA	NA
UHGV-1459862_22	eggNOG-mapper	1080067.BAZH01000027_gene3169	NA	NA
UHGV-1459862_22	Pfam	PF20051	NA	DUF6453
UHGV-1459862_22	Structural annotation	PF20051	NA	NA
UHGV-1459862_23	PHROG	phrog_1591	tail fiber protein	tail
UHGV-1459862_23	UniRef90	UniRef90_A0A7D6UMY8	Phage tail protein	NA
UHGV-1459862_23	eggNOG-mapper	1168549.I6R0Q9_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1459862_23	Structural annotation	PF12195	NA	NA
UHGV-1459862_24	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-1459862_24	PHROG	phrog_36550	NA	unknown function
UHGV-1459862_24	UniRef90	UniRef90_A0A2T1LMJ3	DinI family protein	NA
UHGV-1459862_24	eggNOG-mapper	469595.CSAG_00975	DinI-like family	NA
UHGV-1459862_24	Pfam	PF06183	DinI-like family	DinI
UHGV-1459862_24	Structural annotation	PF06183, NF007893	NA	NA
UHGV-1459862_25	KOfam	K03503	umuD; DNA polymerase V [EC:3.4.21.-]	NA
UHGV-1459862_25	PHROG	phrog_811	UmuD-like protein	DNA, RNA and nucleotide metabolism
UHGV-1459862_25	UniRef90	UniRef90_A0A376I2F8	DNA repair protein	NA
UHGV-1459862_25	eggNOG-mapper	90371.CY43_11975	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1459862_25	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1459862_25	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1459862_25	Structural annotation	PF00717, MF_00015, NF007621, COG1974	NA	NA