UHGV-1460085

Genome information

Genome length 23,714 bps

CDS count 29

Completeness 59.43% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1460085
vOTU ID	vOTU-035414
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0173611
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.54
Jumbo phage	No

Genome content
Genome length	23,714 bps
GC content	56.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	92.96%
Average CDS length	762.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1460085_1	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1460085_1	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1460085_1	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-1460085_1	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-1460085_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1460085_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1460085_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1460085_1	COG	COG0863	DNA modification methylase	NA
UHGV-1460085_1	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1460085_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1460085_3	PHROG	phrog_10250	NA	unknown function
UHGV-1460085_3	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-1460085_3	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1460085_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1460085_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1460085_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-1460085_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1460085_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-1460085_4	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1460085_4	eggNOG-mapper	608534.GCWU000341_02296	phage portal protein, SPP1	NA
UHGV-1460085_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1460085_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1460085_5	PHROG	phrog_28328	NA	unknown function
UHGV-1460085_5	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-1460085_6	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1460085_6	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-1460085_6	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-1460085_6	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1460085_6	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1460085_6	COG	COG2369	NA	NA
UHGV-1460085_6	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1460085_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1460085_8	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-1460085_8	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1460085_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1460085_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1460085_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1460085_9	Structural annotation	PF18152	NA	NA
UHGV-1460085_10	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-1460085_10	Structural annotation	PF06810	NA	NA
UHGV-1460085_11	PHROG	phrog_544	major head protein	head and packaging
UHGV-1460085_11	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1460085_11	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1460085_11	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1460085_13	PHROG	phrog_17977	NA	unknown function
UHGV-1460085_13	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1460085_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1460085_14	PHROG	phrog_17405	head protein	head and packaging
UHGV-1460085_14	Structural annotation	PF11367	NA	NA
UHGV-1460085_15	PHROG	phrog_885	major tail protein	tail
UHGV-1460085_15	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1460085_15	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1460085_15	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1460085_16	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-1460085_18	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1460085_18	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1460085_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1460085_18	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-1460085_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1460085_19	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-1460085_19	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-1460085_19	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1460085_20	PHROG	phrog_3558	tail protein	tail
UHGV-1460085_20	UniRef90	UniRef90_A0A810Q1Y2	Prophage_tail domain-containing protein	NA
UHGV-1460085_20	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-1460085_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1460085_20	COG	COG4926	Phage-related protein	NA
UHGV-1460085_20	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-1460085_21	PHROG	phrog_372	tail protein	tail
UHGV-1460085_21	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-1460085_21	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-1460085_21	Pfam	PF05895	NA	DUF859
UHGV-1460085_21	COG	COG4675	Phage tail collar domain	NA
UHGV-1460085_21	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1460085_22	Structural annotation	PF10651, COG3330	NA	NA
UHGV-1460085_24	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-1460085_24	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-1460085_24	eggNOG-mapper	1121926.AXWO01000001_gene3445	Tyrosine phosphatase family	NA
UHGV-1460085_24	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-1460085_24	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-1460085_24	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA
UHGV-1460085_25	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-1460085_25	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-1460085_25	COG	COG4877	NA	NA
UHGV-1460085_25	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-1460085_28	PHROG	phrog_199	holin	lysis
UHGV-1460085_28	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-1460085_28	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-1460085_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1460085_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1460085_28	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1460085_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1460085_29	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1460085_29	PHROG	phrog_435	endolysin	lysis
UHGV-1460085_29	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1460085_29	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1460085_29	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1460085_29	Pfam	PF05036	SPOR domain	SPOR
UHGV-1460085_29	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1460085_29	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA