UHGV-1460176

Genome information

Genome length 33,939 bps

CDS count 54

Completeness 96.03% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-1460176
vOTU ID	vOTU-065606
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0233152
BioSample	SAMEA4431977
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.74
Jumbo phage	No

Genome content
Genome length	33,939 bps
GC content	54.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.05%
Average CDS length	561.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1460176_1	KOfam	K14059	int; integrase	NA
UHGV-1460176_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1460176_1	UniRef90	UniRef90_A0A6N7TNW8	Tyrosine-type recombinase/integrase	NA
UHGV-1460176_1	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-1460176_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1460176_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1460176_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1460176_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1460176_3	eggNOG-mapper	641112.ACOK01000103_gene519	NA	NA
UHGV-1460176_4	eggNOG-mapper	1280676.AUJO01000009_gene1947	NA	NA
UHGV-1460176_4	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-1460176_5	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1460176_5	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1460176_5	UniRef90	UniRef90_A0A6N7TQ25	Helix-turn-helix domain-containing protein	NA
UHGV-1460176_5	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-1460176_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1460176_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1460176_8	PHROG	phrog_22683	NA	unknown function
UHGV-1460176_8	UniRef90	UniRef90_A0A3E2U205	NA	NA
UHGV-1460176_8	eggNOG-mapper	1008453.HMPREF9957_0722	NA	NA
UHGV-1460176_8	AcrCatalog	cluster_3962	NA	NA
UHGV-1460176_8	Pfam	PF13783	NA	DUF4177
UHGV-1460176_8	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-1460176_9	Structural annotation	PF06776, COG5342	NA	NA
UHGV-1460176_10	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1460176_10	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1460176_10	UniRef90	UniRef90_A0A3A6E835	XRE family transcriptional regulator	NA
UHGV-1460176_10	eggNOG-mapper	748224.HMPREF9436_01793	NA	NA
UHGV-1460176_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1460176_10	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1460176_10	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1460176_10	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1460176_11	UniRef90	UniRef90_UPI001D0DE23E	helix-turn-helix domain-containing protein	NA
UHGV-1460176_11	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-1460176_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1460176_11	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1460176_12	PHROG	phrog_17486	NA	unknown function
UHGV-1460176_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1460176_14	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1460176_14	UniRef90	UniRef90_A0A2J4JRR8	Phage regulatory protein/antirepressor Ant	NA
UHGV-1460176_14	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1460176_14	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1460176_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1460176_14	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1460176_14	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1460176_14	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1460176_15	UniRef90	UniRef90_A0A2J4JRR2	XRE family transcriptional regulator	NA
UHGV-1460176_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1460176_16	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-1460176_16	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1460176_16	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-1460176_18	Structural annotation	PF12270, NF040944	NA	NA
UHGV-1460176_21	PHROG	phrog_38771	NA	unknown function
UHGV-1460176_22	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1460176_22	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1460176_22	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1460176_22	Pfam	PF04404	ERF superfamily	ERF
UHGV-1460176_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1460176_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1460176_23	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1460176_23	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1460176_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1460176_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1460176_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1460176_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1460176_23	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1460176_24	Structural annotation	PF20964, PF13384, NF011523	NA	NA
UHGV-1460176_25	PHROG	phrog_15768	NA	unknown function
UHGV-1460176_25	UniRef90	UniRef90_E2ZNS6	NA	NA
UHGV-1460176_25	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-1460176_25	Pfam	PF19808	NA	DUF6291
UHGV-1460176_25	Structural annotation	PF19808	NA	NA
UHGV-1460176_26	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1460176_26	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-1460176_26	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-1460176_26	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1460176_26	Structural annotation	PF05565	NA	NA
UHGV-1460176_28	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1460176_28	UniRef90	UniRef90_A0A3E2UF94	DNA methylase N-4	NA
UHGV-1460176_28	eggNOG-mapper	936573.HMPREF1147_1705	DEAD-like helicases superfamily	NA
UHGV-1460176_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1460176_28	Structural annotation	PF13872, MF_01821, NF041790, COG0553	NA	NA
UHGV-1460176_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1460176_29	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1460176_29	UniRef90	UniRef90_R6N9D9	DNA methylase family protein	NA
UHGV-1460176_29	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-1460176_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1460176_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1460176_29	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1460176_30	PHROG	phrog_6568	NA	unknown function
UHGV-1460176_30	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-1460176_32	PHROG	phrog_3253	NA	unknown function
UHGV-1460176_32	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-1460176_32	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-1460176_32	Structural annotation	PF18618	NA	NA
UHGV-1460176_35	PHROG	phrog_3136	NA	unknown function
UHGV-1460176_35	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-1460176_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1460176_35	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1460176_36	KOfam	K03700	recU; recombination protein U	NA
UHGV-1460176_36	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1460176_36	UniRef90	UniRef90_A0A1C5P0D5	Holliday junction resolvase RecU	NA
UHGV-1460176_36	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1460176_36	Pfam	PF03838	Recombination protein U	RecU
UHGV-1460176_36	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1460176_36	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1460176_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1460176_37	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1460176_38	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1460176_38	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1460176_38	UniRef90	UniRef90_A0A3A6JQY9	Terminase small subunit	NA
UHGV-1460176_38	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-1460176_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1460176_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1460176_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1460176_39	PHROG	phrog_10250	NA	unknown function
UHGV-1460176_39	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-1460176_39	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-1460176_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1460176_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-1460176_39	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1460176_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-1460176_40	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-1460176_40	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-1460176_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1460176_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1460176_41	UniRef90	UniRef90_A0A1C5NZK4	Phage minor capsid protein 2	NA
UHGV-1460176_41	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-1460176_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1460176_41	COG	COG2369	NA	NA
UHGV-1460176_41	Structural annotation	PF06152, PF12636	NA	NA
UHGV-1460176_43	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1460176_43	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-1460176_43	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1460176_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1460176_44	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-1460176_44	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-1460176_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1460176_44	Structural annotation	PF06810	NA	NA
UHGV-1460176_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-1460176_45	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-1460176_45	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-1460176_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1460176_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1460176_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1460176_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1460176_46	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1460176_47	PHROG	phrog_3366	NA	unknown function
UHGV-1460176_47	Structural annotation	PF20536	NA	NA
UHGV-1460176_48	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1460176_48	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-1460176_48	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-1460176_48	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1460176_48	Structural annotation	PF11114	NA	NA
UHGV-1460176_49	PHROG	phrog_3266	tail completion	connector
UHGV-1460176_49	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-1460176_49	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-1460176_49	Structural annotation	PF12691	NA	NA
UHGV-1460176_50	PHROG	phrog_820	major tail protein	tail
UHGV-1460176_50	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-1460176_50	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1460176_51	PHROG	phrog_4450	NA	unknown function
UHGV-1460176_51	Structural annotation	PF20378	NA	NA
UHGV-1460176_52	PHROG	phrog_706	NA	unknown function
UHGV-1460176_52	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-1460176_52	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-1460176_52	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1460176_52	Structural annotation	PF06854	NA	NA
UHGV-1460176_53	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1460176_53	UniRef90	UniRef90_A0A2J4JRN1	TMP_3 domain-containing protein	NA
UHGV-1460176_53	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-1460176_53	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1460176_53	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1460176_53	COG	COG5283	Phage-related tail protein	NA
UHGV-1460176_53	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1460176_54	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-1460176_54	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA