UHGV-1460232

Genome information

Genome length 35,562 bps

CDS count 61

Completeness 88.63% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-1460232
vOTU ID	vOTU-035415
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0242418
BioSample	SAMEA3449321
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.41
Jumbo phage	No

Genome content
Genome length	35,562 bps
GC content	59.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.45%
Average CDS length	536.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1460232_1	UniRef90	UniRef90_A0A412K8S3	XRE family transcriptional regulator	NA
UHGV-1460232_1	eggNOG-mapper	702459.BBPR_0880	NA	NA
UHGV-1460232_1	Structural annotation	PF08667, MF_00535, NF041677, COG1476	NA	NA
UHGV-1460232_2	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1460232_2	UniRef90	UniRef90_A0A173ZNQ3	Helix-turn-helix transcriptional regulator	NA
UHGV-1460232_2	eggNOG-mapper	1280676.AUJO01000006_gene621	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1460232_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1460232_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1460232_2	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-1460232_5	Structural annotation	PF12989	NA	NA
UHGV-1460232_6	eggNOG-mapper	702459.BBPR_0888	NA	NA
UHGV-1460232_7	UniRef90	UniRef90_A0A6B8LJU6	Hypoyhetical protein	NA
UHGV-1460232_8	UniRef90	UniRef90_UPI00195B738C	helix-turn-helix domain-containing protein	NA
UHGV-1460232_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1460232_8	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1460232_8	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1460232_9	UniRef90	UniRef90_A0A6B8LMI6	Hypoyhetical protein	NA
UHGV-1460232_11	UniRef90	UniRef90_UPI00080BF96B	molecular chaperone GrpE	NA
UHGV-1460232_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1460232_13	UniRef90	UniRef90_A0A412K8R2	Endonuclease	NA
UHGV-1460232_13	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-1460232_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1460232_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1460232_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1460232_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1460232_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1460232_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1460232_14	UniRef90	UniRef90_A0A564S321	Protein RecT	NA
UHGV-1460232_14	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-1460232_14	Pfam	PF03837	RecT family	RecT
UHGV-1460232_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1460232_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1460232_14	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1460232_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1460232_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1460232_16	UniRef90	UniRef90_A0A087D541	Single-stranded DNA-binding protein	NA
UHGV-1460232_16	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-1460232_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1460232_16	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1460232_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1460232_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1460232_16	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1460232_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1460232_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1460232_17	UniRef90	UniRef90_A0A087D540	Putative endodeoxyribonuclease RusA family protein	NA
UHGV-1460232_17	eggNOG-mapper	78346.BRUM_0408	NA	NA
UHGV-1460232_17	Structural annotation	NF007305, COG4570	NA	NA
UHGV-1460232_18	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-1460232_18	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-1460232_18	Structural annotation	PF01815	NA	NA
UHGV-1460232_20	UniRef90	UniRef90_UPI001CFBB2F5	zinc ribbon domain-containing protein	NA
UHGV-1460232_20	Structural annotation	COG1996	NA	NA
UHGV-1460232_22	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1460232_22	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-1460232_22	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1460232_23	UniRef90	UniRef90_A0A8B2Z981	GTP-binding protein	NA
UHGV-1460232_24	UniRef90	UniRef90_A0A267WJ25	Antitoxin	NA
UHGV-1460232_24	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-1460232_25	PHROG	phrog_908	NA	unknown function
UHGV-1460232_25	UniRef90	UniRef90_UPI000E46B1EE	PhnA protein	NA
UHGV-1460232_25	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-1460232_25	Structural annotation	COG0789	NA	NA
UHGV-1460232_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1460232_27	PHROG	phrog_226	minor tail protein	tail
UHGV-1460232_27	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-1460232_28	PHROG	phrog_8680	NA	unknown function
UHGV-1460232_28	UniRef90	UniRef90_A0A087DRQ2	ParB-like protein	NA
UHGV-1460232_28	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-1460232_28	Pfam	PF14386	NA	DUF4417
UHGV-1460232_28	Structural annotation	PF14386	NA	NA
UHGV-1460232_30	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-1460232_30	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-1460232_30	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-1460232_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1460232_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1460232_31	PHROG	phrog_104	portal protein	head and packaging
UHGV-1460232_31	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-1460232_31	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1460232_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1460232_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1460232_32	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1460232_32	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-1460232_33	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-1460232_33	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-1460232_33	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-1460232_34	PHROG	phrog_212	major head protein	head and packaging
UHGV-1460232_34	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-1460232_34	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-1460232_34	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1460232_35	PHROG	phrog_15682	NA	unknown function
UHGV-1460232_36	UniRef90	UniRef90_A0A072MRM0	Head protein	NA
UHGV-1460232_37	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1460232_37	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1460232_37	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1460232_37	Pfam	PF09355	NA	Phage_Gp19
UHGV-1460232_37	Structural annotation	PF09355	NA	NA
UHGV-1460232_38	PHROG	phrog_13779	NA	unknown function
UHGV-1460232_38	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-1460232_38	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-1460232_38	Pfam	PF19586	NA	DUF6093
UHGV-1460232_38	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1460232_39	PHROG	phrog_19109	NA	unknown function
UHGV-1460232_39	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-1460232_39	Structural annotation	TIGR01725	NA	NA
UHGV-1460232_40	UniRef90	UniRef90_A0A3E5HKK5	Transcriptional regulator	NA
UHGV-1460232_40	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-1460232_40	Structural annotation	PF06141	NA	NA
UHGV-1460232_41	PHROG	phrog_2491	major tail protein	tail
UHGV-1460232_41	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-1460232_41	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-1460232_41	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-1460232_42	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-1460232_42	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-1460232_42	Structural annotation	PF08890	NA	NA
UHGV-1460232_43	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-1460232_43	eggNOG-mapper	398513.BBNG_00857	NA	NA
UHGV-1460232_44	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1460232_44	UniRef90	UniRef90_A0A3E5HJQ8	Phage tail tape measure protein	NA
UHGV-1460232_44	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-1460232_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1460232_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1460232_44	COG	COG5283	Phage-related tail protein	NA
UHGV-1460232_44	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1460232_45	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-1460232_45	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1460232_46	PHROG	phrog_538	minor tail protein	tail
UHGV-1460232_46	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-1460232_46	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-1460232_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1460232_46	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1460232_47	PHROG	phrog_9994	NA	unknown function
UHGV-1460232_47	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-1460232_47	Structural annotation	PF20747, PF08931	NA	NA
UHGV-1460232_49	KOfam	K14059	int; integrase	NA
UHGV-1460232_49	PHROG	phrog_1	integrase	integration and excision
UHGV-1460232_49	UniRef90	UniRef90_A0A1X3A1N7	Recombinase	NA
UHGV-1460232_49	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-1460232_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1460232_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1460232_49	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1460232_50	PHROG	phrog_28754	NA	unknown function
UHGV-1460232_50	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-1460232_50	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1460232_51	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1460232_51	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1460232_51	UniRef90	UniRef90_A0A1X3A1S3	Bacterial group 2 Ig-like protein	NA
UHGV-1460232_51	eggNOG-mapper	411477.PARMER_04031	COG NOG06100 non supervised orthologous group	NA
UHGV-1460232_51	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1460232_51	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1460232_51	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1460232_51	COG	COG5492	NA	NA
UHGV-1460232_55	PHROG	phrog_14030	NA	unknown function
UHGV-1460232_55	UniRef90	UniRef90_A0A087DKF1	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1460232_55	eggNOG-mapper	218140.BPSY_0950	NLP P60 protein	NA
UHGV-1460232_55	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1460232_55	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1460232_55	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1460232_55	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1460232_56	UniRef90	UniRef90_A0A0A7I2K7	DoxX	NA
UHGV-1460232_56	eggNOG-mapper	1120979.ATVB01000037_gene1493	NA	NA
UHGV-1460232_57	UniRef90	UniRef90_D4BRZ3	PBECR4 domain-containing protein	NA
UHGV-1460232_57	eggNOG-mapper	401473.BDP_0967	NA	NA
UHGV-1460232_57	Pfam	PF18813	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	PBECR4
UHGV-1460232_58	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1460232_58	UniRef90	UniRef90_A0A2K9BDN3	Phage associated protein	NA
UHGV-1460232_58	eggNOG-mapper	78346.BRUM_0375	Transcriptional regulator	NA
UHGV-1460232_58	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1460232_58	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-1460232_61	KOfam	K14059	int; integrase	NA
UHGV-1460232_61	PHROG	phrog_1	integrase	integration and excision
UHGV-1460232_61	UniRef90	UniRef90_A0A173ZVZ5	Phage integrase family protein	NA
UHGV-1460232_61	eggNOG-mapper	1435051.BMOU_0751	Phage integrase family	NA
UHGV-1460232_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1460232_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1460232_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1460232_61	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA