UHGV-1460407

Genome information

Genome length 34,598 bps

CDS count 46

Completeness 90.73% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-1460407
vOTU ID	vOTU-063788
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0236407
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.9
Jumbo phage	No

Genome content
Genome length	34,598 bps
GC content	42.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.73%
Average CDS length	685.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1460407_1	PHROG	phrog_16164	NA	unknown function
UHGV-1460407_1	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-1460407_1	Structural annotation	PF10651, NF032891	NA	NA
UHGV-1460407_2	PHROG	phrog_13289	tail protein	tail
UHGV-1460407_2	UniRef90	UniRef90_UPI000CDA202F	phage tail protein	NA
UHGV-1460407_2	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1460407_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1460407_2	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-1460407_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1460407_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1460407_2	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1460407_2	Structural annotation	PF14594, PF18957, MF_04116, TIGR01665, COG4926	NA	NA
UHGV-1460407_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1460407_3	UniRef90	UniRef90_UPI00138FB3D0	phage tail protein	NA
UHGV-1460407_3	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-1460407_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1460407_3	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1460407_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-1460407_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1460407_4	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-1460407_4	PHROG	phrog_5218	NA	unknown function
UHGV-1460407_4	UniRef90	UniRef90_UPI000CDB7328	phage tail tape measure protein	NA
UHGV-1460407_4	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-1460407_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1460407_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1460407_4	Structural annotation	PF10145, PF16454, TIGR01760, COG5280	NA	NA
UHGV-1460407_5	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-1460407_5	Structural annotation	PF11836	NA	NA
UHGV-1460407_6	PHROG	phrog_88	major tail protein	tail
UHGV-1460407_6	UniRef90	UniRef90_A0A174HJR5	Major tail protein	NA
UHGV-1460407_6	eggNOG-mapper	1123075.AUDP01000020_gene1518	phage major tail protein, phi13 family	NA
UHGV-1460407_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1460407_6	COG	COG5492	NA	NA
UHGV-1460407_6	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1460407_7	PHROG	phrog_78	tail terminator	connector
UHGV-1460407_7	eggNOG-mapper	1286171.EAL2_c05940	NA	NA
UHGV-1460407_7	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1460407_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1460407_8	UniRef90	UniRef90_UPI0013905FA6	HK97 gp10 family phage protein	NA
UHGV-1460407_8	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-1460407_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1460407_8	Structural annotation	TIGR01725	NA	NA
UHGV-1460407_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1460407_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1460407_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1460407_10	PHROG	phrog_5223	neck protein	connector
UHGV-1460407_10	UniRef90	UniRef90_A0A658K5H0	DNA-packaging protein	NA
UHGV-1460407_10	eggNOG-mapper	1203606.HMPREF1526_00977	NA	NA
UHGV-1460407_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-1460407_11	UniRef90	UniRef90_A0A4Q7PJR6	HK97 family phage major capsid protein	NA
UHGV-1460407_11	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1460407_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1460407_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1460407_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1460407_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1460407_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1460407_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1460407_12	UniRef90	UniRef90_A0A4Q7PKT6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1460407_12	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-1460407_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1460407_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1460407_12	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-1460407_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-1460407_13	UniRef90	UniRef90_UPI001EE04D35	phage portal protein	NA
UHGV-1460407_13	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-1460407_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1460407_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1460407_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1460407_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1460407_14	UniRef90	UniRef90_A0A1C6K9N5	Phage terminase-like protein, large subunit	NA
UHGV-1460407_14	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-1460407_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1460407_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1460407_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1460407_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1460407_15	PHROG	phrog_1066	NA	unknown function
UHGV-1460407_15	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-1460407_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1460407_16	UniRef90	UniRef90_A0A3B8TZX2	HNH endonuclease	NA
UHGV-1460407_16	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-1460407_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1460407_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1460407_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1460407_19	UniRef90	UniRef90_UPI001C0ED9E5	NA	NA
UHGV-1460407_19	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-1460407_19	Pfam	PF07374	NA	DUF1492
UHGV-1460407_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1460407_19	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1460407_20	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-1460407_20	PHROG	phrog_200	lipoprotein	other
UHGV-1460407_20	UniRef90	UniRef90_A0A8G1THJ2	Prohibitin family protein	NA
UHGV-1460407_20	eggNOG-mapper	33035.JPJF01000066_gene3563	prohibitin homologues	NA
UHGV-1460407_20	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-1460407_20	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1460407_20	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-1460407_22	PHROG	phrog_6568	NA	unknown function
UHGV-1460407_24	PHROG	phrog_15198	NA	unknown function
UHGV-1460407_24	UniRef90	UniRef90_A0A1Y3WFI5	NA	NA
UHGV-1460407_24	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-1460407_26	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1460407_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1460407_26	UniRef90	UniRef90_UPI00163B40FF	Lar family restriction alleviation protein	NA
UHGV-1460407_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1460407_26	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1460407_26	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1460407_26	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1460407_28	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1460407_28	eggNOG-mapper	665956.HMPREF1032_03082	NA	NA
UHGV-1460407_30	PHROG	phrog_23707	NA	unknown function
UHGV-1460407_30	UniRef90	UniRef90_UPI00156E1A02	alanine racemase	NA
UHGV-1460407_30	eggNOG-mapper	552398.HMPREF0866_01624	NA	NA
UHGV-1460407_34	PHROG	phrog_15077	NA	unknown function
UHGV-1460407_34	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-1460407_34	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-1460407_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1460407_34	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1460407_35	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1460407_35	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1460407_35	UniRef90	UniRef90_A0A173WRS0	Ribonuclease H	NA
UHGV-1460407_35	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-1460407_35	Pfam	PF00075	RNase H	RNase_H
UHGV-1460407_35	COG	COG0328	Ribonuclease HI	NA
UHGV-1460407_35	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1460407_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1460407_36	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-1460407_36	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-1460407_36	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1460407_43	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1460407_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1460407_43	UniRef90	UniRef90_UPI00156DE017	helix-turn-helix domain-containing protein	NA
UHGV-1460407_43	eggNOG-mapper	1235798.C817_05486	Helix-turn-helix XRE-family like proteins	NA
UHGV-1460407_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1460407_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1460407_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1460407_45	eggNOG-mapper	906968.Trebr_1128	NA	NA
UHGV-1460407_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1460407_46	PHROG	phrog_95	integrase	integration and excision
UHGV-1460407_46	UniRef90	UniRef90_UPI001E3451E3	recombinase family protein	NA
UHGV-1460407_46	eggNOG-mapper	1235792.C808_00650	Resolvase, N terminal domain	NA
UHGV-1460407_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1460407_46	Pfam	PF07508	Recombinase	Recombinase
UHGV-1460407_46	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1460407_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1460407_46	Structural annotation	PF00239, NF041201, COG1961	NA	NA