UHGV-1460465

Genome information

Genome length 20,325 bps

CDS count 27

Completeness 57.80% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-1460465
vOTU ID	vOTU-025351
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0148733
BioSample	SAMN02333920
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.79
Jumbo phage	No

Genome content
Genome length	20,325 bps
GC content	29.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	89.45%
Average CDS length	681.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1460465_1	KOfam	K00754	bshA; L-malate glycosyltransferase [EC:2.4.1.-]	NA
UHGV-1460465_1	PHROG	phrog_2170	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1460465_1	UniRef90	UniRef90_A0A843HRA0	Glycosyltransferase family 4 protein	NA
UHGV-1460465_1	eggNOG-mapper	1196324.A374_03174	COG0438 Glycosyltransferase	NA
UHGV-1460465_1	Pfam	PF00534	Glycosyl transferases group 1	Glycos_transf_1
UHGV-1460465_1	COG	COG0438	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-1460465_3	PHROG	phrog_1066	NA	unknown function
UHGV-1460465_3	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-1460465_3	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1460465_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1460465_4	UniRef90	UniRef90_W9E9N7	Terminase	NA
UHGV-1460465_4	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-1460465_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1460465_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1460465_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1460465_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1460465_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-1460465_5	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-1460465_5	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1460465_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1460465_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1460465_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1460465_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1460465_6	KOfam	K06904	NA	NA
UHGV-1460465_6	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1460465_6	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-1460465_6	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-1460465_6	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1460465_6	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1460465_6	COG	COG3740	Phage head maturation protease	NA
UHGV-1460465_6	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1460465_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-1460465_7	UniRef90	UniRef90_A6TQV0	Putative major capsid protein	NA
UHGV-1460465_7	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-1460465_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1460465_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1460465_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1460465_8	PHROG	phrog_5223	neck protein	connector
UHGV-1460465_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1460465_9	eggNOG-mapper	396034.A6XMK0_9CAUD	NA	NA
UHGV-1460465_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1460465_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1460465_10	UniRef90	UniRef90_UPI001939C793	HK97 gp10 family phage protein	NA
UHGV-1460465_10	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-1460465_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1460465_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1460465_11	eggNOG-mapper	1033744.CAEL01000029_gene1277	NA	NA
UHGV-1460465_11	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1460465_12	PHROG	phrog_88	major tail protein	tail
UHGV-1460465_12	UniRef90	UniRef90_A0A7G9W8B1	Phage tail protein	NA
UHGV-1460465_12	eggNOG-mapper	1120978.KB894081_gene115	phage tail protein	NA
UHGV-1460465_12	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-1460465_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1460465_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1460465_13	PHROG	phrog_709	NA	unknown function
UHGV-1460465_13	Structural annotation	PF11836	NA	NA
UHGV-1460465_14	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1460465_14	UniRef90	UniRef90_A0A7I0FKV7	Phage tail tape measure protein	NA
UHGV-1460465_14	eggNOG-mapper	1033744.CAEL01000029_gene1273	Phage-related minor tail protein	NA
UHGV-1460465_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1460465_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1460465_14	COG	COG5283	Phage-related tail protein	NA
UHGV-1460465_15	PHROG	phrog_17321	NA	unknown function
UHGV-1460465_15	eggNOG-mapper	1123309.AQYB01000019_gene903	Phage-related minor tail protein	NA
UHGV-1460465_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1460465_15	COG	COG5283	Phage-related tail protein	NA
UHGV-1460465_16	Pfam	PF04355	SmpA / OmlA family	SmpA_OmlA
UHGV-1460465_20	Structural annotation	PF14400	NA	NA
UHGV-1460465_21	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-1460465_23	PHROG	phrog_1009	NA	unknown function
UHGV-1460465_24	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-1460465_24	PHROG	phrog_1794	amidase	lysis
UHGV-1460465_24	UniRef90	UniRef90_R7F968	Peptidoglycan-binding domain 1 protein	NA
UHGV-1460465_24	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-1460465_24	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-1460465_24	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1460465_24	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-1460465_24	Structural annotation	PF03412, PF08239, PF18341, NF040678, NF033920, COG4991, COG4990	NA	NA
UHGV-1460465_25	KOfam	K07063	NA	NA
UHGV-1460465_25	UniRef90	UniRef90_A0A3D1PJK3	Putative toxin-antitoxin system toxin component, PIN family	NA
UHGV-1460465_25	eggNOG-mapper	449447.MAE_04250	Toxin-antitoxin system, toxin component, PIN family	NA
UHGV-1460465_25	Pfam	PF13470	PIN domain	PIN_3
UHGV-1460465_25	NCBIFam	TIGR00305.1	putative toxin-antitoxin system toxin component, PIN family	NA
UHGV-1460465_25	COG	COG1569	Predicted nucleic acid-binding protein, contains PIN domain	NA
UHGV-1460465_25	Structural annotation	PF13470, MF_00265, TIGR00305, COG1569	NA	NA