UHGV-1460497

Genome information

vOTU vOTU-020863

Genome length 22,613 bps

CDS count 33

Completeness 60.21% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-1460497
vOTU ID	vOTU-020863
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0165824
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.45
Jumbo phage	No

Genome content
Genome length	22,613 bps
GC content	32.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	92.60%
Average CDS length	636.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1460497_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1460497_1	PHROG	phrog_435	endolysin	lysis
UHGV-1460497_1	UniRef90	UniRef90_UPI000C0765B6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1460497_1	eggNOG-mapper	1280689.AUJC01000011_gene1538	Cell wall hydrolase autolysin	NA
UHGV-1460497_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1460497_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1460497_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1460497_1	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-1460497_2	PHROG	phrog_34399	NA	unknown function
UHGV-1460497_2	UniRef90	UniRef90_A0A0A2HDK2	Membrane protein	NA
UHGV-1460497_2	eggNOG-mapper	536232.CLM_1681	NA	NA
UHGV-1460497_3	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-1460497_3	UniRef90	UniRef90_UPI000C082100	BhlA/UviB family holin-like peptide	NA
UHGV-1460497_3	eggNOG-mapper	1294142.CINTURNW_0311	BhlA holin family	NA
UHGV-1460497_3	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-1460497_4	PHROG	phrog_16573	NA	unknown function
UHGV-1460497_4	UniRef90	UniRef90_UPI00117C83F2	BppU family phage baseplate upper protein	NA
UHGV-1460497_4	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-1460497_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1460497_4	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1460497_4	Structural annotation	PF10651, PF16255, NF040788, COG2755, COG5456	NA	NA
UHGV-1460497_6	PHROG	phrog_7043	tail protein	tail
UHGV-1460497_6	UniRef90	UniRef90_UPI000EA2B1DE	phage tail protein	NA
UHGV-1460497_6	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-1460497_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1460497_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1460497_6	COG	COG4926	Phage-related protein	NA
UHGV-1460497_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1460497_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1460497_7	UniRef90	UniRef90_UPI000C0747FD	phage tail family protein	NA
UHGV-1460497_7	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-1460497_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1460497_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-1460497_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1460497_8	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1460497_8	UniRef90	UniRef90_UPI00189A2A14	phage tail tape measure protein	NA
UHGV-1460497_8	eggNOG-mapper	1321778.HMPREF1982_03558	phage tail tape measure protein	NA
UHGV-1460497_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1460497_8	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1460497_10	PHROG	phrog_1021	NA	unknown function
UHGV-1460497_10	eggNOG-mapper	1443125.Z962_07950	NA	NA
UHGV-1460497_11	PHROG	phrog_885	major tail protein	tail
UHGV-1460497_11	UniRef90	UniRef90_K0G4J0	Gp11	NA
UHGV-1460497_11	eggNOG-mapper	574376.BAMA_15760	NA	NA
UHGV-1460497_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1460497_12	Structural annotation	PF20765	NA	NA
UHGV-1460497_13	UniRef90	UniRef90_UPI000EA091A2	HK97 gp10 family phage protein	NA
UHGV-1460497_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1460497_13	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1460497_14	eggNOG-mapper	1391647.AVSV01000022_gene2564	NA	NA
UHGV-1460497_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1460497_15	UniRef90	UniRef90_UPI0013C967CA	phage head-tail connector protein	NA
UHGV-1460497_15	eggNOG-mapper	1499683.CCFF01000005_gene71	NA	NA
UHGV-1460497_16	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1460497_16	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1460497_16	UniRef90	UniRef90_UPI000C08A48A	collagen-like protein	NA
UHGV-1460497_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1460497_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-1460497_17	UniRef90	UniRef90_A0A3P6KSI0	NA	NA
UHGV-1460497_17	eggNOG-mapper	1415774.U728_1665	NA	NA
UHGV-1460497_17	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1460497_18	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1460497_18	UniRef90	UniRef90_UPI000C086442	NA	NA
UHGV-1460497_18	eggNOG-mapper	1415774.U728_1666	NA	NA
UHGV-1460497_18	Pfam	PF14265	NA	DUF4355
UHGV-1460497_18	Structural annotation	PF14265	NA	NA
UHGV-1460497_19	PHROG	phrog_419	NA	unknown function
UHGV-1460497_19	UniRef90	UniRef90_A0A2X3AGC8	Gp9	NA
UHGV-1460497_19	eggNOG-mapper	673376.F2VHW2_9CAUD	NA	NA
UHGV-1460497_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1460497_20	UniRef90	UniRef90_UPI000C06D26A	minor capsid protein	NA
UHGV-1460497_20	eggNOG-mapper	1499683.CCFF01000005_gene66	Phage Mu protein F like protein	NA
UHGV-1460497_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1460497_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1460497_20	COG	COG2369	NA	NA
UHGV-1460497_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1460497_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-1460497_21	UniRef90	UniRef90_UPI000EA3F913	phage portal protein	NA
UHGV-1460497_21	eggNOG-mapper	536233.CLO_1562	portal protein, SPP1 Gp6-like	NA
UHGV-1460497_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1460497_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1460497_22	PHROG	phrog_11978	NA	unknown function
UHGV-1460497_22	UniRef90	UniRef90_A0A0C1R0Y0	Putative 6-phospho-beta-glucosidase BglA	NA
UHGV-1460497_22	eggNOG-mapper	1123405.AUMM01000039_gene155	TIGRFAM Phage	NA
UHGV-1460497_22	COG	COG5362	Phage terminase large subunit	NA
UHGV-1460497_22	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1460497_23	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-1460497_23	UniRef90	UniRef90_UPI000C0728F3	phBC6A51 family helix-turn-helix protein	NA
UHGV-1460497_23	eggNOG-mapper	1391647.AVSV01000022_gene2554	NA	NA
UHGV-1460497_23	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-1460497_23	Structural annotation	PF13022, COG3677	NA	NA
UHGV-1460497_26	PHROG	phrog_10157	NA	unknown function
UHGV-1460497_26	UniRef90	UniRef90_UPI000C076F29	helix-turn-helix domain-containing protein	NA
UHGV-1460497_26	Structural annotation	PF04545, MF_00674, NF009180, COG2771	NA	NA
UHGV-1460497_27	PHROG	phrog_236	nucleotide kinase	other
UHGV-1460497_27	UniRef90	UniRef90_UPI001A9A39DC	NA	NA
UHGV-1460497_27	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-1460497_27	Pfam	PF11753	NA	DUF3310
UHGV-1460497_29	UniRef90	UniRef90_UPI000C077448	metallophosphoesterase family protein	NA
UHGV-1460497_29	Pfam	PF12850	Calcineurin-like phosphoesterase superfamily domain	Metallophos_2
UHGV-1460497_31	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1460497_31	UniRef90	UniRef90_UPI0018A8EF5C	ERCC4 domain-containing protein	NA
UHGV-1460497_31	eggNOG-mapper	1499683.CCFF01000005_gene55	ERCC4 domain	NA
UHGV-1460497_31	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1460497_31	Structural annotation	PF02732, NF040956, COG1948	NA	NA