UHGV-1460747

Genome information

vOTU vOTU-019829

Genome length 35,579 bps

CDS count 51

Completeness 83.54% (medium-quality)

geNomad score 0.9668

Prediction confidence Confident

Genome information
Genome ID	UHGV-1460747
vOTU ID	vOTU-019829
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0242522
BioSample	SAMN00001700
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9668
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.36
Jumbo phage	No

Genome content
Genome length	35,579 bps
GC content	68.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.90%
Average CDS length	630.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1460747_1	eggNOG-mapper	525246.HMPREF0058_0738	NA	NA
UHGV-1460747_1	Structural annotation	NF033787	NA	NA
UHGV-1460747_3	PHROG	phrog_464	NA	unknown function
UHGV-1460747_3	UniRef90	UniRef90_UPI001F315DE4	NA	NA
UHGV-1460747_3	eggNOG-mapper	47716.JOFH01000001_gene2447	NA	NA
UHGV-1460747_3	Pfam	PF14216	NA	DUF4326
UHGV-1460747_3	Structural annotation	PF14216	NA	NA
UHGV-1460747_6	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1460747_8	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1460747_8	PHROG	phrog_3123	NA	unknown function
UHGV-1460747_8	UniRef90	UniRef90_UPI00189B2E98	AAA family ATPase	NA
UHGV-1460747_8	eggNOG-mapper	313589.JNB_04680	AAA domain	NA
UHGV-1460747_8	Pfam	PF13481	AAA domain	AAA_25
UHGV-1460747_8	COG	COG0467	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	NA
UHGV-1460747_9	PHROG	phrog_5852	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1460747_9	UniRef90	UniRef90_W1VFP8	Prim-Pol domain-containing protein	NA
UHGV-1460747_9	eggNOG-mapper	205879.Q854C1_BPMOM	hydrolase activity, acting on acid anhydrides	NA
UHGV-1460747_9	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1460747_10	PHROG	phrog_870	NA	unknown function
UHGV-1460747_10	eggNOG-mapper	1636184.A0A0E3JTM7_9CAUD	NA	NA
UHGV-1460747_11	PHROG	phrog_466	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1460747_11	UniRef90	UniRef90_A0A3S9QPB5	PDDEXK_1 domain-containing protein	NA
UHGV-1460747_11	eggNOG-mapper	640132.Srot_2345	NA	NA
UHGV-1460747_11	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1460747_15	KOfam	K18955	whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator	NA
UHGV-1460747_15	PHROG	phrog_472	WhiB transcriptional factor	transcription regulation
UHGV-1460747_15	UniRef90	UniRef90_UPI001C130DF0	helix-turn-helix transcriptional regulator	NA
UHGV-1460747_15	eggNOG-mapper	1223544.GSI01S_08_00200	Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA	NA
UHGV-1460747_15	Pfam	PF02467	Transcription factor WhiB	Whib
UHGV-1460747_17	PHROG	phrog_15773	NA	unknown function
UHGV-1460747_20	UniRef90	UniRef90_C0W4C9	DNA binding domain, excisionase family	NA
UHGV-1460747_20	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1460747_20	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1460747_20	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-1460747_21	eggNOG-mapper	1203605.HMPREF1531_00492	NA	NA
UHGV-1460747_23	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-1460747_23	UniRef90	UniRef90_UPI001C5534A9	phage antirepressor N-terminal domain-containing protein	NA
UHGV-1460747_23	eggNOG-mapper	1203568.HMPREF1484_00271	P22_AR N-terminal domain	NA
UHGV-1460747_23	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-1460747_23	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1460747_23	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-1460747_24	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1460747_24	UniRef90	UniRef90_UPI00189850BB	helix-turn-helix domain-containing protein	NA
UHGV-1460747_24	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1460747_25	UniRef90	UniRef90_UPI001E319C28	helix-turn-helix transcriptional regulator	NA
UHGV-1460747_26	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1460747_26	UniRef90	UniRef90_A0A2I1KVZ0	PASTA domain-containing protein	NA
UHGV-1460747_26	eggNOG-mapper	1437610.BREU_1501	Host cell surface-exposed lipoprotein	NA
UHGV-1460747_26	Pfam	PF03793	PASTA domain	PASTA
UHGV-1460747_26	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1460747_26	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1460747_27	UniRef90	UniRef90_UPI0010A240B2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1460747_27	eggNOG-mapper	525246.HMPREF0058_0717	NA	NA
UHGV-1460747_27	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1460747_28	KOfam	K14059	int; integrase	NA
UHGV-1460747_28	PHROG	phrog_1	integrase	integration and excision
UHGV-1460747_28	UniRef90	UniRef90_C0W4G9	Site-specific recombinase, phage integrase family	NA
UHGV-1460747_28	eggNOG-mapper	525246.HMPREF0058_0763	Belongs to the 'phage' integrase family	NA
UHGV-1460747_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1460747_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1460747_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1460747_28	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1460747_30	PHROG	phrog_443	holin	lysis
UHGV-1460747_30	UniRef90	UniRef90_UPI001896FFB4	holin	NA
UHGV-1460747_30	eggNOG-mapper	1125712.HMPREF1316_2355	Putative lactococcus lactis phage r1t holin	NA
UHGV-1460747_30	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1460747_30	Structural annotation	PF16945	NA	NA
UHGV-1460747_31	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1460747_31	PHROG	phrog_4018	amidase	lysis
UHGV-1460747_31	UniRef90	UniRef90_C0W4G6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1460747_31	eggNOG-mapper	525246.HMPREF0058_0760	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1460747_31	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1460747_31	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1460747_31	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1460747_31	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1460747_32	UniRef90	UniRef90_W1VDV5	Endonuclease/exonuclease/phosphatase family protein	NA
UHGV-1460747_32	eggNOG-mapper	525246.HMPREF0058_0759	Endonuclease/Exonuclease/phosphatase family	NA
UHGV-1460747_32	Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	Exo_endo_phos
UHGV-1460747_32	COG	COG0708	Exonuclease III	NA
UHGV-1460747_33	PHROG	phrog_35449	minor tail protein	tail
UHGV-1460747_33	eggNOG-mapper	1688.BCUN_0386	NA	NA
UHGV-1460747_35	PHROG	phrog_1885	minor tail protein	tail
UHGV-1460747_35	eggNOG-mapper	525246.HMPREF0058_0756	NA	NA
UHGV-1460747_35	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1460747_36	PHROG	phrog_5577	minor tail protein	tail
UHGV-1460747_36	UniRef90	UniRef90_UPI0015564F8F	phage tail family protein	NA
UHGV-1460747_36	eggNOG-mapper	525246.HMPREF0058_0755	Phage tail protein	NA
UHGV-1460747_36	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1460747_37	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1460747_37	UniRef90	UniRef90_C0W4G0	TMP repeat protein	NA
UHGV-1460747_37	eggNOG-mapper	525246.HMPREF0058_0754	tape measure	NA
UHGV-1460747_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1460747_40	PHROG	phrog_117	major tail protein	tail
UHGV-1460747_40	eggNOG-mapper	68570.DC74_4931	NA	NA
UHGV-1460747_40	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1460747_42	UniRef90	UniRef90_UPI001555A7D5	NA	NA
UHGV-1460747_42	eggNOG-mapper	525246.HMPREF0058_0749	NA	NA
UHGV-1460747_42	Pfam	PF17395	NA	DUF5403
UHGV-1460747_42	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1460747_43	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1460747_44	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1460747_44	UniRef90	UniRef90_C0W4F3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1460747_44	eggNOG-mapper	1445613.JALM01000017_gene5878	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1460747_44	Pfam	PF09355	NA	Phage_Gp19
UHGV-1460747_44	Structural annotation	PF09355	NA	NA
UHGV-1460747_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-1460747_45	UniRef90	UniRef90_A0A7Y0Y403	Phage major capsid protein	NA
UHGV-1460747_45	eggNOG-mapper	525246.HMPREF0058_0746	Phage capsid family	NA
UHGV-1460747_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1460747_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1460747_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1460747_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1460747_46	PHROG	phrog_15003	head scaffolding protein	head and packaging
UHGV-1460747_46	UniRef90	UniRef90_A0A8F5SC49	Scaffolding protein	NA
UHGV-1460747_46	eggNOG-mapper	525246.HMPREF0058_0745	NA	NA
UHGV-1460747_48	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1460747_48	eggNOG-mapper	1284679.HMPREF1626_03570	NA	NA
UHGV-1460747_49	PHROG	phrog_104	portal protein	head and packaging
UHGV-1460747_49	UniRef90	UniRef90_W1VBN6	Gp14 family protein	NA
UHGV-1460747_49	eggNOG-mapper	525246.HMPREF0058_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1460747_49	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1460747_49	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1460747_50	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1460747_50	UniRef90	UniRef90_C0W4E7	Putative phage terminase, large subunit	NA
UHGV-1460747_50	eggNOG-mapper	525246.HMPREF0058_0741	Terminase	NA
UHGV-1460747_50	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1460747_50	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1460747_51	PHROG	phrog_226	minor tail protein	tail
UHGV-1460747_51	UniRef90	UniRef90_A0A5J6TJA8	Terminase small subunit	NA
UHGV-1460747_51	eggNOG-mapper	525246.HMPREF0058_0740	NA	NA