UHGV-1460843

Genome information

Genome length 23,972 bps

CDS count 36

Completeness 62.91% (medium-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-1460843
vOTU ID	vOTU-035422
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0175381
BioSample	SAMEA2042516
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.01
Jumbo phage	No

Genome content
Genome length	23,972 bps
GC content	47.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	91.76%
Average CDS length	613.25 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1460843_2	Structural annotation	TIGR02215	NA	NA
UHGV-1460843_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-1460843_4	UniRef90	UniRef90_R7CL70	HK97 family phage major capsid protein	NA
UHGV-1460843_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1460843_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1460843_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1460843_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1460843_5	UniRef90	UniRef90_R7CJ61	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1460843_5	eggNOG-mapper	1234593.ANBY01000020_gene1330	Belongs to the peptidase S14 family	NA
UHGV-1460843_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1460843_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1460843_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1460843_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-1460843_6	UniRef90	UniRef90_R7CIN1	Phage portal protein HK97 family	NA
UHGV-1460843_6	eggNOG-mapper	1504822.CCNO01000015_gene619	Portal protein	NA
UHGV-1460843_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1460843_6	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1460843_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1460843_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1460843_7	UniRef90	UniRef90_R7CL66	Gp33	NA
UHGV-1460843_7	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-1460843_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1460843_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1460843_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1460843_7	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1460843_8	UniRef90	UniRef90_R7CJZ6	Phage terminase small subunit putative P27 family	NA
UHGV-1460843_8	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1460843_8	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1460843_10	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1460843_10	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1460843_10	UniRef90	UniRef90_R7CIM0	HNHc domain-containing protein	NA
UHGV-1460843_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1460843_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1460843_10	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1460843_12	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1460843_12	UniRef90	UniRef90_R7CCW9	HNHc domain-containing protein	NA
UHGV-1460843_12	eggNOG-mapper	742742.HMPREF9452_00411	HNH endonuclease	NA
UHGV-1460843_12	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1460843_12	Structural annotation	PF13392, PF13276	NA	NA
UHGV-1460843_13	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-1460843_13	UniRef90	UniRef90_R7CBT9	NA	NA
UHGV-1460843_13	eggNOG-mapper	1636205.A0A0E3TAK6_9CAUD	NA	NA
UHGV-1460843_13	Structural annotation	NF010673	NA	NA
UHGV-1460843_14	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-1460843_14	PHROG	phrog_1	integrase	integration and excision
UHGV-1460843_14	UniRef90	UniRef90_R7CC91	Site-specific recombinase XerD	NA
UHGV-1460843_14	eggNOG-mapper	1384065.JAGS01000001_gene3088	Belongs to the 'phage' integrase family	NA
UHGV-1460843_14	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1460843_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1460843_14	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1460843_14	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1460843_15	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1460843_15	PHROG	phrog_5696	NA	unknown function
UHGV-1460843_15	UniRef90	UniRef90_R7CBI2	N6_Mtase domain-containing protein	NA
UHGV-1460843_15	eggNOG-mapper	665956.HMPREF1032_00649	N-6 DNA Methylase	NA
UHGV-1460843_15	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1460843_15	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1460843_15	Structural annotation	COG0286	NA	NA
UHGV-1460843_18	Structural annotation	PF19808	NA	NA
UHGV-1460843_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1460843_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1460843_20	UniRef90	UniRef90_R7CBH7	Single-stranded DNA-binding protein	NA
UHGV-1460843_20	eggNOG-mapper	742818.HMPREF9451_01652	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1460843_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1460843_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1460843_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1460843_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1460843_20	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1460843_21	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1460843_21	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1460843_21	UniRef90	UniRef90_R7CE09	RecT protein	NA
UHGV-1460843_21	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-1460843_21	Pfam	PF03837	RecT family	RecT
UHGV-1460843_21	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1460843_21	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1460843_22	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1460843_22	UniRef90	UniRef90_R7CCV8	Prophage LambdaSa2 HNH endonuclease family protein	NA
UHGV-1460843_22	eggNOG-mapper	1437610.BREU_1415	HNH endonuclease	NA
UHGV-1460843_22	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1460843_22	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1460843_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1460843_22	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-1460843_23	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1460843_23	UniRef90	UniRef90_R7CBT1	YqaJ	NA
UHGV-1460843_23	eggNOG-mapper	1504822.CCNO01000015_gene597	YqaJ viral recombinase family	NA
UHGV-1460843_23	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1460843_23	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1460843_23	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1460843_23	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1460843_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1460843_24	PHROG	phrog_18056	ParB-like partition nuclease	DNA, RNA and nucleotide metabolism
UHGV-1460843_24	UniRef90	UniRef90_R7CC80	ParB-like protein	NA
UHGV-1460843_24	eggNOG-mapper	1121866.AUGK01000014_gene2072	chromosome segregation	NA
UHGV-1460843_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1460843_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1460843_24	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1460843_26	UniRef90	UniRef90_A0A7X5DET2	HTH myb-type domain-containing protein	NA
UHGV-1460843_26	eggNOG-mapper	1235794.C811_01351	NA	NA
UHGV-1460843_27	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1460843_27	UniRef90	UniRef90_R7CCV4	Endodeoxyribonuclease RusA	NA
UHGV-1460843_27	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1460843_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1460843_27	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1460843_28	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1460843_28	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1460843_28	UniRef90	UniRef90_R7CC75	Phage antirepressor protein	NA
UHGV-1460843_28	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-1460843_28	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1460843_28	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1460843_28	COG	COG3617	Prophage antirepressor	NA
UHGV-1460843_28	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1460843_29	PHROG	phrog_8353	NA	unknown function
UHGV-1460843_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1460843_31	UniRef90	UniRef90_R7CCU8	HTH cro/C1-type domain-containing protein	NA
UHGV-1460843_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1460843_31	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1460843_31	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1460843_34	UniRef90	UniRef90_R7CBG3	DNA-binding helix-turn-helix protein	NA
UHGV-1460843_34	eggNOG-mapper	700015.Corgl_1236	Helix-turn-helix	NA
UHGV-1460843_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1460843_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1460843_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1460843_36	KOfam	K14059	int; integrase	NA
UHGV-1460843_36	PHROG	phrog_1	integrase	integration and excision
UHGV-1460843_36	UniRef90	UniRef90_R7CCU3	Site-specific recombinase XerC	NA
UHGV-1460843_36	eggNOG-mapper	1232436.CAPF01000009_gene1759	Belongs to the 'phage' integrase family	NA
UHGV-1460843_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1460843_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1460843_36	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA