UHGV-1460909

Genome information

Genome length 22,814 bps

CDS count 39

Completeness 50.94% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1460909
vOTU ID	vOTU-035423
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0167290
BioSample	SAMEA3665257
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.41
Jumbo phage	No

Genome content
Genome length	22,814 bps
GC content	48.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	94.61%
Average CDS length	556.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1460909_2	PHROG	phrog_11299	NA	unknown function
UHGV-1460909_2	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-1460909_2	Structural annotation	PF10666	NA	NA
UHGV-1460909_3	PHROG	phrog_3099	NA	unknown function
UHGV-1460909_3	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-1460909_3	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1460909_4	PHROG	phrog_3266	tail completion	connector
UHGV-1460909_4	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-1460909_4	Structural annotation	PF20765	NA	NA
UHGV-1460909_5	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1460909_5	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-1460909_5	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-1460909_5	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1460909_5	Structural annotation	PF11114	NA	NA
UHGV-1460909_6	PHROG	phrog_3366	NA	unknown function
UHGV-1460909_6	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-1460909_6	Pfam	PF20536	NA	DUF6751
UHGV-1460909_6	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1460909_7	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1460909_7	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-1460909_8	PHROG	phrog_212	major head protein	head and packaging
UHGV-1460909_8	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-1460909_8	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-1460909_8	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1460909_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1460909_9	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-1460909_9	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1460909_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1460909_9	Structural annotation	PF06810	NA	NA
UHGV-1460909_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1460909_11	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-1460909_11	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1460909_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1460909_11	COG	COG2369	NA	NA
UHGV-1460909_11	Structural annotation	PF06152	NA	NA
UHGV-1460909_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-1460909_12	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-1460909_12	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-1460909_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1460909_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1460909_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1460909_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1460909_14	UniRef90	UniRef90_UPI000B8B31AD	PBSX family phage terminase large subunit	NA
UHGV-1460909_14	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1460909_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1460909_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1460909_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-1460909_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1460909_15	PHROG	phrog_2412	NA	unknown function
UHGV-1460909_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1460909_16	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-1460909_16	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1460909_16	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1460909_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1460909_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1460909_17	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1460909_17	eggNOG-mapper	60520.HR47_13580	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1460909_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1460909_17	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1460909_19	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1460909_19	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1460909_20	PHROG	phrog_8684	NA	unknown function
UHGV-1460909_20	UniRef90	UniRef90_A0A0J1ICB9	YopX protein	NA
UHGV-1460909_20	eggNOG-mapper	742767.HMPREF9456_03352	YopX protein	NA
UHGV-1460909_20	Pfam	PF09643	YopX protein	YopX
UHGV-1460909_20	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1460909_20	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1460909_21	PHROG	phrog_24517	NA	unknown function
UHGV-1460909_23	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-1460909_23	PHROG	phrog_17284	NA	unknown function
UHGV-1460909_23	UniRef90	UniRef90_UPI0005542322	DNA cytosine methyltransferase	NA
UHGV-1460909_23	eggNOG-mapper	1291050.JAGE01000001_gene476	C-5 cytosine-specific DNA methylase	NA
UHGV-1460909_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1460909_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1460909_23	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1460909_24	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1460909_24	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1460909_24	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-1460909_24	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-1460909_24	Pfam	PF00692	dUTPase	dUTPase
UHGV-1460909_24	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1460909_24	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1460909_24	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1460909_26	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1460909_26	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-1460909_26	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-1460909_26	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1460909_26	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1460909_26	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1460909_27	PHROG	phrog_2113	NA	unknown function
UHGV-1460909_27	UniRef90	UniRef90_A0A832PDJ8	DNA replication protein	NA
UHGV-1460909_27	eggNOG-mapper	871968.DESME_09725	NA	NA
UHGV-1460909_27	Structural annotation	PF21715	NA	NA
UHGV-1460909_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1460909_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1460909_28	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-1460909_28	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-1460909_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1460909_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1460909_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1460909_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1460909_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1460909_30	PHROG	phrog_7566	NA	unknown function
UHGV-1460909_30	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-1460909_31	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1460909_31	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-1460909_31	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1460909_31	Structural annotation	PF05772	NA	NA
UHGV-1460909_32	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1460909_32	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1460909_32	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1460909_32	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-1460909_33	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1460909_33	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-1460909_33	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-1460909_33	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1460909_33	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1460909_35	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1460909_35	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1460909_35	UniRef90	UniRef90_R6EQX1	Beta sliding clamp	NA
UHGV-1460909_35	eggNOG-mapper	1105031.HMPREF1141_2306	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1460909_35	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1460909_35	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-1460909_35	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1460909_35	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-1460909_35	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1460909_35	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1460909_36	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1460909_36	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1460909_36	UniRef90	UniRef90_UPI001C39E2EC	DNA methylase N-4	NA
UHGV-1460909_36	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-1460909_36	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1460909_36	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1460909_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1460909_36	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1460909_36	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1460909_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1460909_37	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-1460909_37	eggNOG-mapper	1235792.C808_03098	Peptidase S24-like	NA
UHGV-1460909_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1460909_37	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1460909_37	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1460909_39	UniRef90	UniRef90_A0A4R2K3U0	Pentapeptide repeat protein	NA
UHGV-1460909_39	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-1460909_39	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1460909_39	COG	COG1357	NA	NA