UHGV-1461406

Genome information

Genome length 17,809 bps

CDS count 36

Completeness 52.99% (medium-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-1461406
vOTU ID	vOTU-035435
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-4344419
BioSample	SAMEA2466963
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.8
Jumbo phage	No

Genome content
Genome length	17,809 bps
GC content	49.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	94.28%
Average CDS length	471.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1461406_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1461406_2	PHROG	phrog_20385	minor tail protein	tail
UHGV-1461406_2	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-1461406_2	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-1461406_2	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1461406_3	PHROG	phrog_7064	tail protein	tail
UHGV-1461406_3	eggNOG-mapper	665956.HMPREF1032_00106	NA	NA
UHGV-1461406_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1461406_3	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-1461406_4	PHROG	phrog_5811	NA	unknown function
UHGV-1461406_4	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-1461406_4	Structural annotation	PF20747, TIGR03353	NA	NA
UHGV-1461406_5	PHROG	phrog_15594	NA	unknown function
UHGV-1461406_5	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1461406_5	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1461406_6	PHROG	phrog_31538	NA	unknown function
UHGV-1461406_7	PHROG	phrog_13589	NA	unknown function
UHGV-1461406_7	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-1461406_9	KOfam	K10454	KLHL17; kelch-like protein 17 (actinfilin)	NA
UHGV-1461406_9	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-1461406_9	Pfam	PF13418	Galactose oxidase, central domain	Kelch_4
UHGV-1461406_9	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-1461406_10	PHROG	phrog_37900	NA	unknown function
UHGV-1461406_10	UniRef90	UniRef90_A0A2V2GLK0	NA	NA
UHGV-1461406_10	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-1461406_10	Pfam	PF19789	NA	DUF6273
UHGV-1461406_10	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1461406_10	Structural annotation	PF19789, PF03785	NA	NA
UHGV-1461406_11	PHROG	phrog_29409	NA	unknown function
UHGV-1461406_11	UniRef90	UniRef90_A0A2V2GQ35	Isoaspartyl peptidase	NA
UHGV-1461406_14	PHROG	phrog_27545	NA	unknown function
UHGV-1461406_14	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-1461406_14	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-1461406_14	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1461406_15	PHROG	phrog_37604	NA	unknown function
UHGV-1461406_15	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-1461406_16	eggNOG-mapper	1347392.CCEZ01000043_gene405	NA	NA
UHGV-1461406_17	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1461406_17	PHROG	phrog_15001	endolysin	lysis
UHGV-1461406_17	UniRef90	UniRef90_A0A8D9UHF0	PGRP protein	NA
UHGV-1461406_17	eggNOG-mapper	411483.FAEPRAA2165_03397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1461406_17	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1461406_17	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1461406_17	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-1461406_18	KOfam	K14059	int; integrase	NA
UHGV-1461406_18	PHROG	phrog_1	integrase	integration and excision
UHGV-1461406_18	UniRef90	UniRef90_UPI001E298856	site-specific integrase	NA
UHGV-1461406_18	eggNOG-mapper	1007096.BAGW01000023_gene159	Phage integrase family	NA
UHGV-1461406_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1461406_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1461406_18	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1461406_20	UniRef90	UniRef90_UPI001E2EC555	helix-turn-helix domain-containing protein	NA
UHGV-1461406_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1461406_20	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1461406_20	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-1461406_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1461406_21	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-1461406_21	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-1461406_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1461406_21	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1461406_22	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-1461406_22	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1461406_25	UniRef90	UniRef90_UPI001E431871	helix-turn-helix transcriptional regulator	NA
UHGV-1461406_25	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1461406_26	Structural annotation	NF041588	NA	NA
UHGV-1461406_30	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1461406_30	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-1461406_30	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1461406_30	Pfam	PF06378	NA	DUF1071
UHGV-1461406_30	Structural annotation	PF06378, COG4712	NA	NA
UHGV-1461406_31	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1461406_31	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1461406_31	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1461406_31	Structural annotation	PF05772	NA	NA
UHGV-1461406_32	PHROG	phrog_7566	NA	unknown function
UHGV-1461406_32	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1461406_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1461406_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1461406_33	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-1461406_33	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-1461406_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1461406_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1461406_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1461406_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1461406_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1461406_34	PHROG	phrog_16304	NA	unknown function
UHGV-1461406_34	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-1461406_34	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-1461406_34	Pfam	PF19808	NA	DUF6291
UHGV-1461406_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1461406_34	Structural annotation	PF19808	NA	NA
UHGV-1461406_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1461406_35	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1461406_35	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1461406_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1461406_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1461406_35	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1461406_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1461406_36	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1461406_36	UniRef90	UniRef90_A0A2V2GLN0	DNA methyltransferase (Fragment)	NA
UHGV-1461406_36	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-1461406_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1461406_36	COG	COG0270	DNA-cytosine methylase	NA