UHGV-1461480

Genome information

Genome length 21,485 bps

CDS count 28

Completeness 53.64% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-1461480
vOTU ID	vOTU-035438
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0157500
BioSample	SAMN06350107
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.92
Jumbo phage	No

Genome content
Genome length	21,485 bps
GC content	53.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	94.65%
Average CDS length	728.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1461480_1	KOfam	K03791	K03791; putative chitinase	NA
UHGV-1461480_1	PHROG	phrog_181	endolysin	lysis
UHGV-1461480_1	UniRef90	UniRef90_UPI001F0B41FA	glycoside hydrolase family 19 protein	NA
UHGV-1461480_1	eggNOG-mapper	716541.ECL_01679	PFAM glycoside hydrolase family 19	NA
UHGV-1461480_1	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-1461480_1	COG	COG3179	Chitinase, GH19 family	NA
UHGV-1461480_2	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-1461480_2	eggNOG-mapper	906669.G8C7W1_9CAUD	NA	NA
UHGV-1461480_3	PHROG	phrog_3593	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1461480_3	UniRef90	UniRef90_UPI00157CF02D	HNH endonuclease	NA
UHGV-1461480_3	eggNOG-mapper	356851.JOAN01000003_gene1486	HNH endonuclease	NA
UHGV-1461480_3	PADLOC	HEase_00033	homing endonuclease	RM
UHGV-1461480_3	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1461480_4	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1461480_4	UniRef90	UniRef90_A0A0V9JR54	Glycosyltransferase	NA
UHGV-1461480_4	eggNOG-mapper	716541.ECL_01682	Glycosyl transferase, family 2	NA
UHGV-1461480_4	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-1461480_4	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-1461480_7	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1461480_7	UniRef90	UniRef90_A0A7I7FZX7	Bacteriophage protein	NA
UHGV-1461480_7	eggNOG-mapper	432200.K7P7D2_9CAUD	transferase activity	NA
UHGV-1461480_7	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-1461480_8	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1461480_8	UniRef90	UniRef90_K7P7P6	HNHc domain-containing protein	NA
UHGV-1461480_8	eggNOG-mapper	1147157.K7PHM4_9CAUD	HNH endonuclease	NA
UHGV-1461480_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1461480_9	PHROG	phrog_10282	NA	unknown function
UHGV-1461480_9	UniRef90	UniRef90_UPI001C6FFEE1	serine acetyltransferase	NA
UHGV-1461480_9	eggNOG-mapper	1147143.K7P7A6_9CAUD	NA	NA
UHGV-1461480_10	PHROG	phrog_5601	terminase small subunit	head and packaging
UHGV-1461480_10	UniRef90	UniRef90_K7P7C0	Terminase small subunit	NA
UHGV-1461480_10	eggNOG-mapper	10742.Q77WA1_BPHK0	NA	NA
UHGV-1461480_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1461480_11	UniRef90	UniRef90_K7P849	Terminase large subunit	NA
UHGV-1461480_11	eggNOG-mapper	1147157.K7PJW8_9CAUD	Phage Terminase	NA
UHGV-1461480_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1461480_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1461480_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1461480_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-1461480_12	UniRef90	UniRef90_P49859	Portal protein	NA
UHGV-1461480_12	eggNOG-mapper	1147158.K7PH80_9CAUD	Phage portal protein	NA
UHGV-1461480_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1461480_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1461480_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1461480_13	KOfam	K06904	NA	NA
UHGV-1461480_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1461480_13	UniRef90	UniRef90_P49860	Prohead protease	NA
UHGV-1461480_13	eggNOG-mapper	1147158.K7PKL4_9CAUD	peptidase activity	NA
UHGV-1461480_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1461480_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1461480_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1461480_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-1461480_14	UniRef90	UniRef90_P49861	Major capsid protein	NA
UHGV-1461480_14	eggNOG-mapper	1147158.K7PJR8_9CAUD	peptidase activity	NA
UHGV-1461480_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1461480_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1461480_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1461480_15	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1461480_15	UniRef90	UniRef90_K7PGU9	Head-tail connector I	NA
UHGV-1461480_15	eggNOG-mapper	10742.Q77W99_BPHK0	Phage gp6-like head-tail connector protein	NA
UHGV-1461480_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1461480_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1461480_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-1461480_16	UniRef90	UniRef90_Q9MCT0	Putative head-tail adaptor	NA
UHGV-1461480_16	eggNOG-mapper	432200.K7P7L2_9CAUD	Phage head-tail joining protein	NA
UHGV-1461480_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1461480_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1461480_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1461480_17	PHROG	phrog_23409	NA	unknown function
UHGV-1461480_17	UniRef90	UniRef90_A0A7T0DT37	HK97 gp10 family phage protein	NA
UHGV-1461480_17	eggNOG-mapper	1147158.K7PH84_9CAUD	exonuclease activity	NA
UHGV-1461480_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1461480_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1461480_17	Structural annotation	TIGR01725	NA	NA
UHGV-1461480_18	PHROG	phrog_347	tail terminator	connector
UHGV-1461480_18	UniRef90	UniRef90_UPI0018EBEF03	NA	NA
UHGV-1461480_18	eggNOG-mapper	1147158.K7PKL6_9CAUD	NA	NA
UHGV-1461480_18	Structural annotation	PF11367	NA	NA
UHGV-1461480_19	PHROG	phrog_158	major tail protein	tail
UHGV-1461480_19	UniRef90	UniRef90_A0A0J6QHY2	Phage tail protein	NA
UHGV-1461480_19	eggNOG-mapper	1399774.JDWH01000035_gene2227	NA	NA
UHGV-1461480_19	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-1461480_19	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1461480_20	PHROG	phrog_344	tail assembly chaperone	tail
UHGV-1461480_20	UniRef90	UniRef90_A4WB21	Phage tail assembly chaperone	NA
UHGV-1461480_20	eggNOG-mapper	432200.K7P7C2_9CAUD	Pfam:Phage_TAC_1	NA
UHGV-1461480_20	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-1461480_20	Structural annotation	PF06222	NA	NA
UHGV-1461480_21	PHROG	phrog_14766	tail protein	tail
UHGV-1461480_21	UniRef90	UniRef90_UPI0015D4A0E8	NA	NA
UHGV-1461480_21	eggNOG-mapper	432200.K7P7L5_9CAUD	NA	NA
UHGV-1461480_21	Pfam	PF13227	NA	DUF4035
UHGV-1461480_22	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-1461480_22	UniRef90	UniRef90_K7PH87	Tail length tape measure protein	NA
UHGV-1461480_22	eggNOG-mapper	432200.K7P6I2_9CAUD	peptidoglycan catabolic process	NA
UHGV-1461480_22	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1461480_22	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-1461480_22	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-1461480_22	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-1461480_22	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-1461480_23	PHROG	phrog_14	minor tail protein	tail
UHGV-1461480_23	UniRef90	UniRef90_K7P828	Minor tail protein	NA
UHGV-1461480_23	eggNOG-mapper	432200.K7P7R1_9CAUD	Phage minor tail protein	NA
UHGV-1461480_23	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-1461480_23	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1461480_24	PHROG	phrog_18	minor tail protein	tail
UHGV-1461480_24	UniRef90	UniRef90_K7P7D8	Minor tail protein L	NA
UHGV-1461480_24	eggNOG-mapper	10742.Q9MCU4_BPHK0	Phage minor tail protein L	NA
UHGV-1461480_24	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1461480_24	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-1461480_24	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-1461480_25	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-1461480_25	PHROG	phrog_30	minor tail protein	tail
UHGV-1461480_25	UniRef90	UniRef90_A0A5B7XGC0	Peptidase P60	NA
UHGV-1461480_25	eggNOG-mapper	1147158.K7PGV2_9CAUD	peptidoglycan catabolic process	NA
UHGV-1461480_25	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-1461480_25	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1461480_25	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-1461480_26	PHROG	phrog_890	lipoprotein	other
UHGV-1461480_26	eggNOG-mapper	1166130.H650_06760	NA	NA
UHGV-1461480_26	Structural annotation	PF11008, TIGR03000, COG4704	NA	NA
UHGV-1461480_27	PHROG	phrog_32	tail assembly protein	tail
UHGV-1461480_27	UniRef90	UniRef90_UPI0003BFC718	tail assembly protein	NA
UHGV-1461480_27	eggNOG-mapper	399742.Ent638_2220	lambda tail assembly I	NA
UHGV-1461480_27	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-1461480_27	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-1461480_27	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-1461480_28	PHROG	phrog_2589	tail protein	tail
UHGV-1461480_28	UniRef90	UniRef90_UPI0015F50772	phage tail protein	NA
UHGV-1461480_28	eggNOG-mapper	10742.Q9MCU0_BPHK0	Putative phage tail protein	NA
UHGV-1461480_28	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1461480_28	Structural annotation	PF13550, PF14109, PF16325, PF16383, NF040662, COG4733	NA	NA