UHGV-1461488

Genome information

Genome length 34,656 bps

CDS count 53

Completeness 99.50% (high-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-1461488
vOTU ID	vOTU-007441
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0236732
BioSample	SAMEA2042553
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.85
Jumbo phage	No

Genome content
Genome length	34,656 bps
GC content	45.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.13%
Average CDS length	607.87 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1461488_1	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1461488_1	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-1461488_1	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-1461488_1	COG	COG5283	Phage-related tail protein	NA
UHGV-1461488_1	Structural annotation	COG5280	NA	NA
UHGV-1461488_2	PHROG	phrog_2115	tail protein	tail
UHGV-1461488_2	eggNOG-mapper	411470.RUMGNA_02074	NA	NA
UHGV-1461488_2	Structural annotation	PF11836	NA	NA
UHGV-1461488_3	PHROG	phrog_88	major tail protein	tail
UHGV-1461488_3	UniRef90	UniRef90_A0A174GEX1	Phage major tail protein, phi13 family	NA
UHGV-1461488_3	eggNOG-mapper	411470.RUMGNA_02073	phage major tail protein, phi13 family	NA
UHGV-1461488_3	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1461488_3	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1461488_5	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1461488_5	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1461488_5	UniRef90	UniRef90_UPI00189F5377	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1461488_5	eggNOG-mapper	742738.HMPREF9460_00723	Sigma-70, region 4	NA
UHGV-1461488_5	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1461488_5	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1461488_5	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-1461488_6	PHROG	phrog_25	head closure Hc1	connector
UHGV-1461488_6	UniRef90	UniRef90_UPI0018A09726	phage head closure protein	NA
UHGV-1461488_6	eggNOG-mapper	457415.HMPREF1006_01810	Phage head-tail joining protein	NA
UHGV-1461488_6	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1461488_6	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1461488_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1461488_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1461488_7	UniRef90	UniRef90_UPI00189F0492	terminase large subunit	NA
UHGV-1461488_7	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-1461488_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1461488_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1461488_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1461488_7	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1461488_8	PHROG	phrog_1066	NA	unknown function
UHGV-1461488_8	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-1461488_8	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1461488_9	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1461488_9	UniRef90	UniRef90_UPI00174D9AD3	AAA family ATPase	NA
UHGV-1461488_9	eggNOG-mapper	97138.C820_00619	HNH endonuclease	NA
UHGV-1461488_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1461488_9	Pfam	PF13671	AAA domain	AAA_33
UHGV-1461488_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1461488_9	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1461488_10	UniRef90	UniRef90_UPI0017482B2D	head-tail connector protein	NA
UHGV-1461488_10	eggNOG-mapper	1089548.KI783301_gene3223	NA	NA
UHGV-1461488_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1461488_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1461488_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-1461488_11	UniRef90	UniRef90_UPI00189E8004	phage major capsid protein	NA
UHGV-1461488_11	eggNOG-mapper	1297617.JPJD01000009_gene2879	Phage capsid family	NA
UHGV-1461488_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1461488_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1461488_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1461488_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1461488_12	KOfam	K06904	NA	NA
UHGV-1461488_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1461488_12	UniRef90	UniRef90_UPI00189F8542	HK97 family phage prohead protease	NA
UHGV-1461488_12	eggNOG-mapper	1089548.KI783301_gene3225	Caudovirus prohead serine protease	NA
UHGV-1461488_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1461488_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1461488_12	COG	COG3740	Phage head maturation protease	NA
UHGV-1461488_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1461488_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-1461488_13	UniRef90	UniRef90_UPI0018A06444	phage portal protein	NA
UHGV-1461488_13	eggNOG-mapper	1089548.KI783301_gene3227	Phage portal protein	NA
UHGV-1461488_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1461488_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1461488_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1461488_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1461488_14	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-1461488_17	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1461488_17	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1461488_17	UniRef90	UniRef90_UPI00189FEFF5	helix-turn-helix domain-containing protein	NA
UHGV-1461488_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1461488_17	Structural annotation	PF01381, MF_02017, NF010465, NF006550, COG3655	NA	NA
UHGV-1461488_18	AcrCatalog	cluster_86746	NA	NA
UHGV-1461488_19	UniRef90	UniRef90_UPI0018A0336D	helix-turn-helix transcriptional regulator	NA
UHGV-1461488_19	eggNOG-mapper	272563.CD630_09071	sequence-specific DNA binding	NA
UHGV-1461488_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1461488_19	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1461488_19	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1461488_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1461488_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1461488_20	UniRef90	UniRef90_UPI00189ECC37	helix-turn-helix domain-containing protein	NA
UHGV-1461488_20	eggNOG-mapper	1280680.AUJU01000017_gene3835	Helix-turn-helix domain	NA
UHGV-1461488_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1461488_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1461488_21	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1461488_21	PHROG	phrog_95	integrase	integration and excision
UHGV-1461488_21	UniRef90	UniRef90_UPI00189CB9E2	recombinase family protein	NA
UHGV-1461488_21	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-1461488_21	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1461488_21	Pfam	PF07508	Recombinase	Recombinase
UHGV-1461488_21	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1461488_21	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1461488_21	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1461488_22	eggNOG-mapper	411470.RUMGNA_02072	NA	NA
UHGV-1461488_23	UniRef90	UniRef90_C9LCM7	Phage protein, HK97 gp10 family	NA
UHGV-1461488_23	eggNOG-mapper	411470.RUMGNA_02071	NA	NA
UHGV-1461488_23	Structural annotation	TIGR01725	NA	NA
UHGV-1461488_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1461488_24	UniRef90	UniRef90_C9LCM8	Putative phage head-tail adaptor	NA
UHGV-1461488_24	eggNOG-mapper	411470.RUMGNA_02070	NA	NA
UHGV-1461488_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1461488_25	PHROG	phrog_5223	neck protein	connector
UHGV-1461488_25	UniRef90	UniRef90_UPI00111128DD	DNA-packaging protein	NA
UHGV-1461488_25	eggNOG-mapper	397290.C810_00423	NA	NA
UHGV-1461488_26	UniRef90	UniRef90_R5GG97	SAP domain-containing protein	NA
UHGV-1461488_26	eggNOG-mapper	537007.BLAHAN_07191	membrane spanning protein TolA K03646	NA
UHGV-1461488_26	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1461488_26	Structural annotation	PF14000	NA	NA
UHGV-1461488_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-1461488_27	UniRef90	UniRef90_G5FEZ7	HK97 family phage major capsid protein	NA
UHGV-1461488_27	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-1461488_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1461488_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1461488_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1461488_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1461488_28	KOfam	K06904	NA	NA
UHGV-1461488_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1461488_28	UniRef90	UniRef90_N9YK30	HK97 family phage prohead protease	NA
UHGV-1461488_28	eggNOG-mapper	397290.C810_00420	Phage prohead protease, HK97 family	NA
UHGV-1461488_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1461488_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1461488_28	COG	COG3740	Phage head maturation protease	NA
UHGV-1461488_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1461488_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-1461488_29	UniRef90	UniRef90_A0A2K4ZKK6	Phage portal protein	NA
UHGV-1461488_29	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-1461488_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1461488_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1461488_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1461488_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1461488_30	UniRef90	UniRef90_C9LCN6	Putative phage terminase, large subunit	NA
UHGV-1461488_30	eggNOG-mapper	411470.RUMGNA_02062	NA	NA
UHGV-1461488_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1461488_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1461488_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1461488_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1461488_31	PHROG	phrog_1066	NA	unknown function
UHGV-1461488_31	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-1461488_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1461488_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1461488_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1461488_32	UniRef90	UniRef90_R6SPQ8	HNHc domain-containing protein	NA
UHGV-1461488_32	eggNOG-mapper	411470.RUMGNA_02060	HNH endonuclease	NA
UHGV-1461488_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1461488_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1461488_33	eggNOG-mapper	411470.RUMGNA_02059	NA	NA
UHGV-1461488_34	PHROG	phrog_1558	NA	unknown function
UHGV-1461488_34	UniRef90	UniRef90_UPI001EE9266C	sigma-70 region 4 domain-containing protein	NA
UHGV-1461488_34	eggNOG-mapper	411470.RUMGNA_02058	NA	NA
UHGV-1461488_34	Structural annotation	PF08281, TIGR01636	NA	NA
UHGV-1461488_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1461488_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1461488_35	UniRef90	UniRef90_A0A174GDE6	Single-stranded DNA-binding protein	NA
UHGV-1461488_35	eggNOG-mapper	411470.RUMGNA_02057	Single-strand binding protein family	NA
UHGV-1461488_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1461488_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1461488_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1461488_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1461488_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1461488_37	UniRef90	UniRef90_A0A396NNM4	DNA-binding protein	NA
UHGV-1461488_37	eggNOG-mapper	411470.RUMGNA_02055	NA	NA
UHGV-1461488_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1461488_38	PHROG	phrog_15982	NA	unknown function
UHGV-1461488_38	UniRef90	UniRef90_N9XAA8	ParB domain-containing protein	NA
UHGV-1461488_38	eggNOG-mapper	411470.RUMGNA_02052	NA	NA
UHGV-1461488_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1461488_38	Pfam	PF12961	NA	DUF3850
UHGV-1461488_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1461488_38	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-1461488_39	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1461488_39	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1461488_39	UniRef90	UniRef90_N9XAL6	AAA_31 domain-containing protein	NA
UHGV-1461488_39	eggNOG-mapper	411470.RUMGNA_02050	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-1461488_39	Pfam	PF13614	AAA domain	AAA_31
UHGV-1461488_39	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1461488_39	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1461488_40	PHROG	phrog_824	NA	unknown function
UHGV-1461488_40	UniRef90	UniRef90_N9YVI1	VRR-NUC domain-containing protein	NA
UHGV-1461488_40	eggNOG-mapper	411470.RUMGNA_02049	VRR-NUC domain	NA
UHGV-1461488_40	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1461488_40	Structural annotation	PF08774	NA	NA
UHGV-1461488_41	PHROG	phrog_31711	NA	unknown function
UHGV-1461488_41	eggNOG-mapper	411470.RUMGNA_02048	NA	NA
UHGV-1461488_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1461488_42	eggNOG-mapper	537007.BLAHAN_07210	NA	NA
UHGV-1461488_42	Structural annotation	PF21578	NA	NA
UHGV-1461488_43	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1461488_43	UniRef90	UniRef90_A0A6B9SRT0	CMP glycosidase	NA
UHGV-1461488_43	eggNOG-mapper	411470.RUMGNA_02046	NA	NA
UHGV-1461488_43	Pfam	PF14359	NA	DUF4406
UHGV-1461488_43	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1461488_44	PHROG	phrog_33537	NA	unknown function
UHGV-1461488_44	eggNOG-mapper	411470.RUMGNA_02045	NA	NA
UHGV-1461488_44	Structural annotation	COG0268	NA	NA
UHGV-1461488_45	UniRef90	UniRef90_UPI001C0CED42	toxin PIN	NA
UHGV-1461488_45	eggNOG-mapper	411470.RUMGNA_02044	NA	NA
UHGV-1461488_45	Structural annotation	PF02185	NA	NA
UHGV-1461488_46	PHROG	phrog_26861	NA	unknown function
UHGV-1461488_46	UniRef90	UniRef90_C9LCQ5	Single-strand binding family protein	NA
UHGV-1461488_46	eggNOG-mapper	411470.RUMGNA_02043	NA	NA
UHGV-1461488_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1461488_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1461488_46	Structural annotation	PF00436, PF17426, MF_00984, NF004476, COG0629, COG3390	NA	NA
UHGV-1461488_47	PHROG	phrog_20014	NA	unknown function
UHGV-1461488_47	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-1461488_48	UniRef90	UniRef90_A0A174GIS6	Long-chain fatty acid--CoA ligase	NA
UHGV-1461488_48	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-1461488_49	eggNOG-mapper	411470.RUMGNA_02040	NA	NA
UHGV-1461488_51	eggNOG-mapper	411470.RUMGNA_02038	NA	NA
UHGV-1461488_52	eggNOG-mapper	397290.C810_00391	NA	NA
UHGV-1461488_52	Structural annotation	PF16090	NA	NA
UHGV-1461488_53	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-1461488_53	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1461488_53	UniRef90	UniRef90_C9LCR3	HTH_38 domain-containing protein	NA
UHGV-1461488_53	eggNOG-mapper	411470.RUMGNA_02034	NA	NA
UHGV-1461488_53	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-1461488_53	Structural annotation	PF11427	NA	NA