UHGV-1461491

Genome information

Genome length 34,653 bps

CDS count 48

Completeness 99.50% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1461491
vOTU ID	vOTU-013184
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0236725
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.88
Jumbo phage	No

Genome content
Genome length	34,653 bps
GC content	57.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	90.51%
Average CDS length	656.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1461491_1	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-1461491_4	PHROG	phrog_9534	head protein	head and packaging
UHGV-1461491_4	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-1461491_5	PHROG	phrog_538	minor tail protein	tail
UHGV-1461491_5	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1461491_5	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-1461491_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1461491_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1461491_6	PHROG	phrog_36410	NA	unknown function
UHGV-1461491_6	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-1461491_6	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-1461491_6	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1461491_7	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1461491_7	UniRef90	UniRef90_A0A3A6KBM3	TMP_3 domain-containing protein	NA
UHGV-1461491_7	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-1461491_7	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1461491_7	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1461491_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1461491_7	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1461491_9	PHROG	phrog_706	NA	unknown function
UHGV-1461491_9	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-1461491_9	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-1461491_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1461491_9	Structural annotation	PF06854	NA	NA
UHGV-1461491_10	PHROG	phrog_4450	NA	unknown function
UHGV-1461491_10	Structural annotation	PF20378	NA	NA
UHGV-1461491_11	PHROG	phrog_820	major tail protein	tail
UHGV-1461491_11	eggNOG-mapper	718252.FP2_06610	NA	NA
UHGV-1461491_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1461491_12	PHROG	phrog_3266	tail completion	connector
UHGV-1461491_12	eggNOG-mapper	718252.FP2_06620	NA	NA
UHGV-1461491_12	Structural annotation	PF12691	NA	NA
UHGV-1461491_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1461491_13	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-1461491_13	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-1461491_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1461491_13	Structural annotation	PF11114	NA	NA
UHGV-1461491_14	PHROG	phrog_3366	NA	unknown function
UHGV-1461491_14	Pfam	PF20536	NA	DUF6751
UHGV-1461491_14	Structural annotation	PF20536	NA	NA
UHGV-1461491_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1461491_16	PHROG	phrog_267	major head protein	head and packaging
UHGV-1461491_16	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-1461491_16	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-1461491_16	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1461491_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1461491_17	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-1461491_17	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-1461491_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1461491_17	Structural annotation	PF06810	NA	NA
UHGV-1461491_18	PHROG	phrog_34144	NA	unknown function
UHGV-1461491_18	eggNOG-mapper	742742.HMPREF9452_00763	NA	NA
UHGV-1461491_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1461491_19	UniRef90	UniRef90_UPI001C0164DE	phage minor capsid protein	NA
UHGV-1461491_19	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-1461491_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1461491_19	COG	COG2369	NA	NA
UHGV-1461491_19	Structural annotation	PF06152, PF12106	NA	NA
UHGV-1461491_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-1461491_20	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-1461491_20	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-1461491_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1461491_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1461491_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1461491_21	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-1461491_21	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-1461491_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1461491_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1461491_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1461491_22	PHROG	phrog_2412	NA	unknown function
UHGV-1461491_22	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-1461491_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1461491_23	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-1461491_23	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-1461491_23	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1461491_24	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1461491_24	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1461491_24	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1461491_24	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1461491_25	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1461491_25	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1461491_25	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-1461491_25	eggNOG-mapper	926562.Oweho_0014	DnaD domain protein	NA
UHGV-1461491_25	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-1461491_25	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1461491_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1461491_25	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-1461491_26	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-1461491_26	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-1461491_27	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1461491_27	UniRef90	UniRef90_A0A2A7BH07	Phage recombination protein Bet	NA
UHGV-1461491_27	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-1461491_27	Pfam	PF03837	RecT family	RecT
UHGV-1461491_27	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1461491_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1461491_27	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1461491_28	PHROG	phrog_674	NA	unknown function
UHGV-1461491_28	UniRef90	UniRef90_A0A3E2UDL3	NA	NA
UHGV-1461491_28	eggNOG-mapper	1121296.JONJ01000020_gene588	NA	NA
UHGV-1461491_28	Pfam	PF07083	NA	DUF1351
UHGV-1461491_28	Structural annotation	PF07083	NA	NA
UHGV-1461491_29	PHROG	phrog_38771	NA	unknown function
UHGV-1461491_30	PHROG	phrog_1733	NA	unknown function
UHGV-1461491_30	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-1461491_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1461491_30	Structural annotation	PF03677	NA	NA
UHGV-1461491_31	PHROG	phrog_1029	NA	unknown function
UHGV-1461491_31	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-1461491_31	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1461491_32	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1461491_32	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-1461491_32	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-1461491_34	Structural annotation	PF12270, NF040944	NA	NA
UHGV-1461491_36	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-1461491_36	Pfam	PF05339	NA	DUF739
UHGV-1461491_36	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1461491_36	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-1461491_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1461491_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1461491_39	UniRef90	UniRef90_E2ZIF0	DNA-binding helix-turn-helix protein	NA
UHGV-1461491_39	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-1461491_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1461491_39	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1461491_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1461491_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1461491_41	eggNOG-mapper	748224.HMPREF9436_01443	vancomycin resistance protein	NA
UHGV-1461491_41	COG	COG2720	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	NA
UHGV-1461491_42	KOfam	K14059	int; integrase	NA
UHGV-1461491_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1461491_42	UniRef90	UniRef90_A0A2A7AII9	Tyr recombinase domain-containing protein	NA
UHGV-1461491_42	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-1461491_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1461491_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1461491_42	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1461491_43	PHROG	phrog_28749	NA	unknown function
UHGV-1461491_43	UniRef90	UniRef90_UPI0012DDA932	NA	NA
UHGV-1461491_43	eggNOG-mapper	657322.FPR_20410	NA	NA
UHGV-1461491_43	Pfam	PF19537	NA	DUF6061
UHGV-1461491_43	Structural annotation	PF19537	NA	NA
UHGV-1461491_45	PHROG	phrog_14664	NA	unknown function
UHGV-1461491_45	eggNOG-mapper	264732.Moth_0671	NA	NA
UHGV-1461491_45	Structural annotation	PF00644, COG5654	NA	NA
UHGV-1461491_46	PHROG	phrog_28749	NA	unknown function
UHGV-1461491_46	UniRef90	UniRef90_UPI0012DDD6A8	NA	NA
UHGV-1461491_46	eggNOG-mapper	657322.FPR_20410	NA	NA
UHGV-1461491_46	Pfam	PF19537	NA	DUF6061
UHGV-1461491_47	UniRef90	UniRef90_UPI001CBC6CBB	transposase	NA
UHGV-1461491_47	eggNOG-mapper	411483.FAEPRAA2165_00409	NA	NA
UHGV-1461491_48	UniRef90	UniRef90_A0A3R6WBN3	Recombinase (Fragment)	NA
UHGV-1461491_48	eggNOG-mapper	411483.FAEPRAA2165_00408	NA	NA
UHGV-1461491_48	AcrCatalog	cluster_16291	NA	NA
UHGV-1461491_48	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-1461491_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1461491_48	Structural annotation	PF01076, NF041497, NF038178	NA	NA