UHGV-1461946

Genome information

Genome length 22,678 bps

CDS count 34

Completeness 61.76% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-1461946
vOTU ID	vOTU-035446
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0166239
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.33
Jumbo phage	No

Genome content
Genome length	22,678 bps
GC content	58.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	94.36%
Average CDS length	632.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1461946_6	PHROG	phrog_6160	NA	unknown function
UHGV-1461946_6	eggNOG-mapper	314345.SPV1_06379	NA	NA
UHGV-1461946_7	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-1461946_7	Structural annotation	PF10723	NA	NA
UHGV-1461946_9	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1461946_9	PHROG	phrog_1794	amidase	lysis
UHGV-1461946_9	UniRef90	UniRef90_N1ZHY5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1461946_9	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-1461946_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1461946_9	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1461946_9	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1461946_10	PHROG	phrog_443	holin	lysis
UHGV-1461946_10	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-1461946_10	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1461946_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1461946_10	Structural annotation	PF16945	NA	NA
UHGV-1461946_11	PHROG	phrog_937	hemolysin	other
UHGV-1461946_13	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-1461946_13	Structural annotation	PF10618	NA	NA
UHGV-1461946_14	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-1461946_14	UniRef90	UniRef90_UPI000834AF98	NA	NA
UHGV-1461946_14	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-1461946_14	Pfam	PF19789	NA	DUF6273
UHGV-1461946_14	Structural annotation	PF19789	NA	NA
UHGV-1461946_15	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-1461946_15	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1461946_16	Structural annotation	PF16408, NF033510	NA	NA
UHGV-1461946_17	PHROG	phrog_10898	NA	unknown function
UHGV-1461946_17	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-1461946_17	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-1461946_17	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-1461946_17	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-1461946_19	Structural annotation	PF10651	NA	NA
UHGV-1461946_20	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-1461946_21	PHROG	phrog_26795	NA	unknown function
UHGV-1461946_21	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-1461946_21	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-1461946_21	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1461946_22	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1461946_22	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1461946_22	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1461946_22	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1461946_23	PHROG	phrog_33680	NA	unknown function
UHGV-1461946_23	UniRef90	UniRef90_A0A2Z4I560	Phage tail protein	NA
UHGV-1461946_23	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-1461946_23	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1461946_23	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1461946_24	Structural annotation	PF11836	NA	NA
UHGV-1461946_25	PHROG	phrog_88	major tail protein	tail
UHGV-1461946_25	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-1461946_25	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-1461946_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1461946_25	COG	COG5492	NA	NA
UHGV-1461946_25	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1461946_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1461946_26	Structural annotation	TIGR01725	NA	NA
UHGV-1461946_27	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-1461946_27	Structural annotation	PF05657	NA	NA
UHGV-1461946_28	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1461946_28	UniRef90	UniRef90_UPI001B02B074	phage head closure protein	NA
UHGV-1461946_28	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-1461946_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1461946_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1461946_28	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1461946_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1461946_29	PHROG	phrog_5223	neck protein	connector
UHGV-1461946_29	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-1461946_29	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-1461946_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-1461946_30	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-1461946_30	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1461946_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1461946_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1461946_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1461946_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1461946_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1461946_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1461946_31	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-1461946_31	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1461946_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1461946_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1461946_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1461946_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-1461946_32	UniRef90	UniRef90_R8W4B0	HK97 family phage portal protein	NA
UHGV-1461946_32	eggNOG-mapper	1203606.HMPREF1526_00980	Portal protein	NA
UHGV-1461946_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1461946_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1461946_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1461946_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1461946_33	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-1461946_33	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-1461946_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1461946_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1461946_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1461946_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1461946_34	PHROG	phrog_1066	NA	unknown function
UHGV-1461946_34	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA