UHGV-1462031

Genome information

Genome length 35,515 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-1462031
vOTU ID	vOTU-070592
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0242092
BioSample	NA
Country	Bangladesh
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.07
Jumbo phage	No

Genome content
Genome length	35,515 bps
GC content	46.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.68%
Average CDS length	526.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1462031_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1462031_1	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1462031_1	UniRef90	UniRef90_A0A7V8A6P5	Phage terminase large subunit PBSX family	NA
UHGV-1462031_1	eggNOG-mapper	386415.NT01CX_0834	Phage terminase, large subunit, PBSX family	NA
UHGV-1462031_1	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1462031_1	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1462031_1	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1462031_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-1462031_1	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1462031_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-1462031_3	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1462031_3	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1462031_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1462031_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1462031_5	Structural annotation	PF02973	NA	NA
UHGV-1462031_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1462031_8	PHROG	phrog_435	endolysin	lysis
UHGV-1462031_8	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-1462031_8	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-1462031_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1462031_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1462031_8	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-1462031_9	PHROG	phrog_263	holin	lysis
UHGV-1462031_9	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-1462031_9	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-1462031_9	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1462031_9	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1462031_9	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1462031_11	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1462031_11	UniRef90	UniRef90_A0A3D2MUF2	Phage_Mu_F domain-containing protein	NA
UHGV-1462031_11	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-1462031_11	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1462031_11	COG	COG2369	NA	NA
UHGV-1462031_11	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1462031_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1462031_12	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1462031_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1462031_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1462031_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1462031_13	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1462031_13	Structural annotation	PF06810	NA	NA
UHGV-1462031_14	PHROG	phrog_267	major head protein	head and packaging
UHGV-1462031_14	UniRef90	UniRef90_F8UBM2	p22 coat protein	NA
UHGV-1462031_14	eggNOG-mapper	673376.F2VHW8_9CAUD	viral capsid	NA
UHGV-1462031_14	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1462031_17	PHROG	phrog_17977	NA	unknown function
UHGV-1462031_17	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1462031_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1462031_18	PHROG	phrog_17405	head protein	head and packaging
UHGV-1462031_18	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-1462031_18	Structural annotation	PF11367	NA	NA
UHGV-1462031_19	PHROG	phrog_885	major tail protein	tail
UHGV-1462031_19	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1462031_19	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1462031_19	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1462031_22	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1462031_22	UniRef90	UniRef90_A0A4D6A5R1	Minor tail protein	NA
UHGV-1462031_22	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-1462031_22	COG	COG5283	Phage-related tail protein	NA
UHGV-1462031_22	Structural annotation	PF20155	NA	NA
UHGV-1462031_23	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1462031_23	eggNOG-mapper	545697.HMPREF0216_02861	tail tape measure protein	NA
UHGV-1462031_23	COG	COG5283	Phage-related tail protein	NA
UHGV-1462031_24	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1462031_24	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-1462031_24	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-1462031_24	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1462031_24	COG	COG4722	Phage-related protein YomH	NA
UHGV-1462031_24	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1462031_25	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1462031_25	UniRef90	UniRef90_UPI000CF99656	phage tail protein	NA
UHGV-1462031_25	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1462031_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1462031_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1462031_25	COG	COG4926	Phage-related protein	NA
UHGV-1462031_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1462031_29	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1462031_29	UniRef90	UniRef90_A0A136Q8Q2	Ser/Thr phosphatase family protein	NA
UHGV-1462031_29	eggNOG-mapper	443254.Marpi_0340	metallophosphoesterase	NA
UHGV-1462031_29	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-1462031_29	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-1462031_30	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-1462031_32	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1462031_32	PHROG	phrog_923	NA	unknown function
UHGV-1462031_32	UniRef90	UniRef90_UPI0009F73A1A	pentapeptide repeat-containing protein	NA
UHGV-1462031_32	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-1462031_32	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1462031_32	Pfam	PF13576	Pentapeptide repeats (9 copies)	Pentapeptide_3
UHGV-1462031_32	COG	COG1357	NA	NA
UHGV-1462031_32	Structural annotation	PF13599, PF18350, MF_01354, NF000420, COG4873	NA	NA
UHGV-1462031_34	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1462031_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1462031_36	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1462031_37	PHROG	phrog_22984	NA	unknown function
UHGV-1462031_38	PHROG	phrog_21718	NA	unknown function
UHGV-1462031_38	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1462031_40	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1462031_40	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1462031_40	UniRef90	UniRef90_A0A2G6I066	Methyltransferase	NA
UHGV-1462031_40	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-1462031_40	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1462031_40	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1462031_40	Structural annotation	PF01555, NF008572, COG0863	NA	NA
UHGV-1462031_41	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1462031_41	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1462031_41	UniRef90	UniRef90_R6EQX1	Beta sliding clamp	NA
UHGV-1462031_41	eggNOG-mapper	1105031.HMPREF1141_2306	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1462031_41	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1462031_41	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-1462031_41	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1462031_41	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-1462031_41	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1462031_41	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1462031_43	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1462031_43	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-1462031_43	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-1462031_43	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1462031_43	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1462031_44	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1462031_44	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1462031_44	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-1462031_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1462031_45	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1462031_45	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1462031_45	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1462031_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1462031_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1462031_47	UniRef90	UniRef90_A0A316T6C0	Single-stranded DNA-binding protein	NA
UHGV-1462031_47	eggNOG-mapper	1507.HMPREF0262_03706	Single-stranded DNA-binding protein	NA
UHGV-1462031_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1462031_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1462031_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1462031_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1462031_47	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1462031_48	PHROG	phrog_6969	NA	unknown function
UHGV-1462031_48	UniRef90	UniRef90_UPI00168060E9	helix-turn-helix domain-containing protein	NA
UHGV-1462031_48	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1462031_48	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1462031_49	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1462031_49	UniRef90	UniRef90_UPI001C103B88	conserved phage C-terminal domain-containing protein	NA
UHGV-1462031_49	eggNOG-mapper	457396.CSBG_01034	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1462031_49	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1462031_49	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1462031_49	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-1462031_50	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1462031_50	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1462031_50	UniRef90	UniRef90_A0A3A5TME7	AAA family ATPase	NA
UHGV-1462031_50	eggNOG-mapper	552396.HMPREF0863_01515	IstB-like ATP binding protein	NA
UHGV-1462031_50	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1462031_50	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-1462031_50	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1462031_50	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-1462031_51	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1462031_51	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1462031_51	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-1462031_51	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-1462031_51	Pfam	PF00692	dUTPase	dUTPase
UHGV-1462031_51	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1462031_51	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1462031_51	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1462031_55	PHROG	phrog_8684	NA	unknown function
UHGV-1462031_55	UniRef90	UniRef90_A0A1C6E8F9	YopX protein	NA
UHGV-1462031_55	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-1462031_55	Pfam	PF09643	YopX protein	YopX
UHGV-1462031_55	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1462031_55	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1462031_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1462031_57	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1462031_57	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1462031_57	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-1462031_57	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1462031_57	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1462031_58	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1462031_58	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1462031_58	UniRef90	UniRef90_UPI0016807AF9	site-specific DNA-methyltransferase	NA
UHGV-1462031_58	eggNOG-mapper	1541883.A0A088FRS2_9CAUD	N-methyltransferase activity	NA
UHGV-1462031_58	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1462031_58	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1462031_58	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1462031_60	Structural annotation	PF01381, PF13613, NF041951, COG1476	NA	NA
UHGV-1462031_61	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1462031_61	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-1462031_61	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1462031_62	PHROG	phrog_2412	NA	unknown function
UHGV-1462031_62	eggNOG-mapper	563192.HMPREF0179_00168	NA	NA
UHGV-1462031_62	Structural annotation	PF18932	NA	NA
UHGV-1462031_63	eggNOG-mapper	536233.CLO_0532	Phage terminase, large subunit, PBSX family	NA
UHGV-1462031_63	COG	COG1783	Phage terminase large subunit	NA