UHGV-1462116

Genome information

Genome length 33,872 bps

CDS count 50

Completeness 73.15% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-1462116
vOTU ID	vOTU-016347
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0232818
BioSample	SAMEA3664501
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.98
Jumbo phage	No

Genome content
Genome length	33,872 bps
GC content	32.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	95.04%
Average CDS length	648.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1462116_3	Structural annotation	PF04325, TIGR04116, COG5570	NA	NA
UHGV-1462116_4	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1462116_4	UniRef90	UniRef90_A0A7I8DYN2	YqaJ domain-containing protein	NA
UHGV-1462116_4	eggNOG-mapper	1211844.CBLM010000016_gene1516	YqaJ-like viral recombinase domain	NA
UHGV-1462116_4	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1462116_4	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1462116_4	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1462116_4	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-1462116_5	PHROG	phrog_674	NA	unknown function
UHGV-1462116_5	UniRef90	UniRef90_A0A416FZA6	NA	NA
UHGV-1462116_5	Pfam	PF07083	NA	DUF1351
UHGV-1462116_5	Structural annotation	PF07083	NA	NA
UHGV-1462116_6	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1462116_6	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1462116_6	UniRef90	UniRef90_A0A7I8E0N6	Putative recombinase-phage associated	NA
UHGV-1462116_6	eggNOG-mapper	1211844.CBLM010000016_gene1512	RecT family	NA
UHGV-1462116_6	Pfam	PF03837	RecT family	RecT
UHGV-1462116_6	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1462116_6	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1462116_6	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1462116_7	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1462116_7	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-1462116_7	Structural annotation	PF09681, MF_01177, NF033789, COG0640	NA	NA
UHGV-1462116_8	PHROG	phrog_9804	NA	unknown function
UHGV-1462116_8	UniRef90	UniRef90_A0A2T3G297	Inhibitor_G39P domain-containing protein	NA
UHGV-1462116_8	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1462116_8	Structural annotation	PF11417	NA	NA
UHGV-1462116_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1462116_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1462116_9	UniRef90	UniRef90_A0A2T3G281	Single-stranded DNA-binding protein	NA
UHGV-1462116_9	eggNOG-mapper	1211844.CBLM010000119_gene3417	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-1462116_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1462116_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1462116_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1462116_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1462116_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1462116_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1462116_11	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1462116_11	UniRef90	UniRef90_A0A2T3G2C3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1462116_11	eggNOG-mapper	1211844.CBLM010000016_gene1505	Endodeoxyribonuclease RusA	NA
UHGV-1462116_11	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1462116_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1462116_11	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1462116_12	PHROG	phrog_7445	NA	unknown function
UHGV-1462116_12	eggNOG-mapper	1232449.BAHV02000018_gene1541	PcfK-like protein	NA
UHGV-1462116_12	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1462116_13	PHROG	phrog_8470	NA	unknown function
UHGV-1462116_13	UniRef90	UniRef90_UPI00047FE04A	PcfJ domain-containing protein	NA
UHGV-1462116_13	eggNOG-mapper	1211844.CBLM010000016_gene1507	PcfJ-like protein	NA
UHGV-1462116_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1462116_13	Structural annotation	PF14284, NF008072	NA	NA
UHGV-1462116_15	Structural annotation	PF01283, NF006816, COG4830	NA	NA
UHGV-1462116_16	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1462116_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1462116_18	PHROG	phrog_13561	NA	unknown function
UHGV-1462116_19	PHROG	phrog_31107	NA	unknown function
UHGV-1462116_22	UniRef90	UniRef90_A0A7U9CJ41	Phosphagen kinase N-terminal domain-containing protein	NA
UHGV-1462116_22	Structural annotation	PF13973, NF008465, COG5475	NA	NA
UHGV-1462116_23	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1462116_23	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-1462116_23	UniRef90	UniRef90_A0A416D4J0	N6_Mtase domain-containing protein	NA
UHGV-1462116_23	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-1462116_23	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-1462116_23	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1462116_23	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1462116_23	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-1462116_24	PHROG	phrog_12650	NA	unknown function
UHGV-1462116_24	Structural annotation	NF010673	NA	NA
UHGV-1462116_26	UniRef90	UniRef90_A0A2T3G2L3	Ferritin-like diiron domain-containing protein	NA
UHGV-1462116_26	eggNOG-mapper	1211844.CBLM010000023_gene991	NA	NA
UHGV-1462116_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1462116_27	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1462116_27	UniRef90	UniRef90_A0A2T3G2F6	Sigma70_r4_2 domain-containing protein	NA
UHGV-1462116_27	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-1462116_27	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-1462116_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1462116_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1462116_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1462116_28	PHROG	phrog_10250	NA	unknown function
UHGV-1462116_28	UniRef90	UniRef90_A0A416FZH9	PBSX family phage terminase large subunit	NA
UHGV-1462116_28	eggNOG-mapper	1121105.ATXL01000006_gene1371	Terminase-like family	NA
UHGV-1462116_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1462116_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1462116_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1462116_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1462116_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1462116_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1462116_29	UniRef90	UniRef90_A0A416FZX0	Phage portal protein	NA
UHGV-1462116_29	eggNOG-mapper	476272.RUMHYD_02846	Phage portal protein, SPP1 family	NA
UHGV-1462116_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1462116_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1462116_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1462116_30	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-1462116_30	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1462116_30	UniRef90	UniRef90_A0A1C6FP41	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-1462116_30	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1462116_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1462116_30	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1462116_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1462116_30	COG	COG2369	NA	NA
UHGV-1462116_30	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-1462116_32	PHROG	phrog_1233	NA	unknown function
UHGV-1462116_32	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-1462116_32	Structural annotation	PF13058	NA	NA
UHGV-1462116_33	PHROG	phrog_30609	NA	unknown function
UHGV-1462116_33	Structural annotation	PF21485	NA	NA
UHGV-1462116_34	KOfam	K07584	NA	NA
UHGV-1462116_34	PHROG	phrog_4478	peptidase	other
UHGV-1462116_34	UniRef90	UniRef90_A0A1C6FNU8	Predicted ribosomal protein	NA
UHGV-1462116_34	eggNOG-mapper	555088.DealDRAFT_1009	Pfam:Peptidase_C108	NA
UHGV-1462116_34	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1462116_34	COG	COG2868	NA	NA
UHGV-1462116_34	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-1462116_35	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1462116_35	UniRef90	UniRef90_UPI001D064961	NA	NA
UHGV-1462116_35	eggNOG-mapper	476272.RUMHYD_02853	NA	NA
UHGV-1462116_35	Pfam	PF14265	NA	DUF4355
UHGV-1462116_35	Structural annotation	PF14265	NA	NA
UHGV-1462116_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-1462116_36	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-1462116_36	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1462116_37	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-1462116_37	UniRef90	UniRef90_UPI0018F16521	Rho termination protein	NA
UHGV-1462116_37	eggNOG-mapper	491915.Aflv_0665	NA	NA
UHGV-1462116_38	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1462116_38	UniRef90	UniRef90_UPI001961CD9D	phage head-tail connector protein	NA
UHGV-1462116_38	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-1462116_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1462116_38	Structural annotation	PF05135	NA	NA
UHGV-1462116_39	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1462116_39	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-1462116_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1462116_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1462116_40	UniRef90	UniRef90_UPI0019D0375C	HK97 gp10 family phage protein	NA
UHGV-1462116_40	eggNOG-mapper	1462527.CCDM010000010_gene529	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1462116_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1462116_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1462116_40	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1462116_41	PHROG	phrog_176	tail terminator	connector
UHGV-1462116_41	UniRef90	UniRef90_A0A416FZL1	NA	NA
UHGV-1462116_41	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-1462116_41	Structural annotation	PF11367	NA	NA
UHGV-1462116_42	PHROG	phrog_238	major tail protein	tail
UHGV-1462116_42	UniRef90	UniRef90_A0A2T3G2T7	Phage major tail protein, TP901-1 family	NA
UHGV-1462116_42	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-1462116_42	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1462116_42	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1462116_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1462116_43	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1462116_43	UniRef90	UniRef90_A0A315ZUX3	Phage tail assembly chaperone protein, TAC	NA
UHGV-1462116_43	eggNOG-mapper	1158610.UC3_03187	Phage tail assembly chaperone protein, TAC	NA
UHGV-1462116_43	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1462116_43	Structural annotation	PF12363	NA	NA
UHGV-1462116_44	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1462116_45	PHROG	phrog_1204	tail protein	tail
UHGV-1462116_45	UniRef90	UniRef90_A0A2T3G2D5	TMP_3 domain-containing protein	NA
UHGV-1462116_45	eggNOG-mapper	1134413.ANNK01000120_gene2014	Phage tail tape measure protein, TP901 family	NA
UHGV-1462116_45	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1462116_45	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1462116_45	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1462116_45	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1462116_46	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1462116_46	UniRef90	UniRef90_UPI001D093A04	phage tail family protein	NA
UHGV-1462116_46	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-1462116_46	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1462116_46	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1462116_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-1462116_46	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1462116_47	KOfam	K10352	MYH9s; myosin heavy chain 9/10/11/14	NA
UHGV-1462116_47	PHROG	phrog_9478	minor tail protein	tail
UHGV-1462116_47	UniRef90	UniRef90_A0A2T3G2E5	Peptidase S74 domain-containing protein	NA
UHGV-1462116_47	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-1462116_47	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-1462116_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1462116_47	Structural annotation	PF14594, PF00529, TIGR01665, TIGR02971, COG4926	NA	NA
UHGV-1462116_48	PHROG	phrog_2566	NA	unknown function
UHGV-1462116_48	eggNOG-mapper	1449342.JQMR01000001_gene983	NA	NA
UHGV-1462116_49	PHROG	phrog_1401	NA	unknown function
UHGV-1462116_49	UniRef90	UniRef90_UPI00077668B1	NA	NA
UHGV-1462116_49	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-1462116_49	Structural annotation	PF07761	NA	NA
UHGV-1462116_50	PHROG	phrog_1129	holin	lysis
UHGV-1462116_50	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-1462116_50	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1462116_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1462116_50	Structural annotation	PF06946	NA	NA