UHGV-1462202

Genome information

Genome length 41,476 bps

CDS count 56

Completeness 95.33% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-1462202
vOTU ID	vOTU-064128
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0276245
BioSample	SAMEA2738022
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.6
Jumbo phage	No

Genome content
Genome length	41,476 bps
GC content	48.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.42%
Average CDS length	694.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1462202_1	KOfam	K14059	int; integrase	NA
UHGV-1462202_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1462202_1	UniRef90	UniRef90_A0A1F0DZT6	Tyr recombinase domain-containing protein	NA
UHGV-1462202_1	eggNOG-mapper	32042.PstZobell_12574	Belongs to the 'phage' integrase family	NA
UHGV-1462202_1	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-1462202_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1462202_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1462202_1	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-1462202_2	PHROG	phrog_1249	acetyltransferase	other
UHGV-1462202_2	UniRef90	UniRef90_UPI00195828CD	GNAT family N-acetyltransferase	NA
UHGV-1462202_2	eggNOG-mapper	557598.LHK_01537	carboxylic acid catabolic process	NA
UHGV-1462202_2	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1462202_2	COG	COG3375	Predicted acetyltransferase, GNAT superfamily	NA
UHGV-1462202_2	Structural annotation	PF00583, MF_02210, NF007530, COG0456	NA	NA
UHGV-1462202_3	eggNOG-mapper	557598.LHK_01538	NA	NA
UHGV-1462202_4	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1462202_4	UniRef90	UniRef90_UPI00195AB98B	portal protein	NA
UHGV-1462202_4	eggNOG-mapper	360910.BAV0422	Bacteriophage head to tail connecting protein	NA
UHGV-1462202_4	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1462202_4	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1462202_5	PHROG	phrog_528	NA	unknown function
UHGV-1462202_5	UniRef90	UniRef90_UPI000B9E7A85	endopeptidase	NA
UHGV-1462202_5	eggNOG-mapper	194699.Q775C5_BPBPP	NA	NA
UHGV-1462202_6	PHROG	phrog_458	protease	other
UHGV-1462202_6	UniRef90	UniRef90_UPI0013EFD20D	protease	NA
UHGV-1462202_6	eggNOG-mapper	557598.LHK_01541	NA	NA
UHGV-1462202_7	PHROG	phrog_212	major head protein	head and packaging
UHGV-1462202_7	UniRef90	UniRef90_UPI00065FCAA1	NA	NA
UHGV-1462202_7	eggNOG-mapper	360910.BAV0425	NA	NA
UHGV-1462202_7	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1462202_7	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1462202_8	PHROG	phrog_427	NA	unknown function
UHGV-1462202_8	UniRef90	UniRef90_Q775C8	Bbp16	NA
UHGV-1462202_8	eggNOG-mapper	194699.Q775C8_BPBPP	NA	NA
UHGV-1462202_8	Pfam	PF21190	Bbp16	Bbp16
UHGV-1462202_8	Structural annotation	PF21190, NF041539, COG4935	NA	NA
UHGV-1462202_10	PHROG	phrog_394	tail protein	tail
UHGV-1462202_10	UniRef90	UniRef90_K0MCD7	NA	NA
UHGV-1462202_10	eggNOG-mapper	360910.BAV0428	NA	NA
UHGV-1462202_10	Structural annotation	PF17212	NA	NA
UHGV-1462202_11	PHROG	phrog_376	tail protein	tail
UHGV-1462202_11	UniRef90	UniRef90_A0A6F8VDG3	NA	NA
UHGV-1462202_11	eggNOG-mapper	557598.LHK_01546	NA	NA
UHGV-1462202_11	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1462202_12	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1462202_12	UniRef90	UniRef90_K0M940	NA	NA
UHGV-1462202_12	eggNOG-mapper	557598.LHK_01551	NA	NA
UHGV-1462202_13	PHROG	phrog_10475	endolysin	lysis
UHGV-1462202_13	UniRef90	UniRef90_A0A7C6PEE0	Transglycosylase SLT domain-containing protein	NA
UHGV-1462202_13	eggNOG-mapper	318586.Pden_3770	heme binding	NA
UHGV-1462202_13	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1462202_14	PHROG	phrog_9880	NA	unknown function
UHGV-1462202_14	UniRef90	UniRef90_A0A0R3Q2Z1	LPD22 domain-containing protein	NA
UHGV-1462202_14	eggNOG-mapper	194699.Q775D4_BPBPP	metallopeptidase activity	NA
UHGV-1462202_14	Pfam	PF18834	Large polyvalent protein associated domain 22	LPD22
UHGV-1462202_14	Pfam	PF18809	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1	PBECR1
UHGV-1462202_15	PHROG	phrog_1640	tail protein	tail
UHGV-1462202_15	UniRef90	UniRef90_A0A378WUQ2	Pectate lyase superfamily protein	NA
UHGV-1462202_15	eggNOG-mapper	641149.HMPREF9016_02029	Right handed beta helix region	NA
UHGV-1462202_15	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-1462202_15	NCBIFam	TIGR03804.1	parallel beta-helix repeat protein	NA
UHGV-1462202_15	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1462202_16	PHROG	phrog_4237	holin	lysis
UHGV-1462202_16	UniRef90	UniRef90_UPI00124C2542	HP1 family phage holin	NA
UHGV-1462202_16	eggNOG-mapper	1331660.L313_2821	Bacteriophage holin family, superfamily II-like	NA
UHGV-1462202_16	Pfam	PF16082	Bacteriophage holin family, superfamily II-like	Phage_holin_2_4
UHGV-1462202_17	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1462202_17	PHROG	phrog_7	endolysin	lysis
UHGV-1462202_17	UniRef90	UniRef90_A0A3N4MI00	Lysozyme	NA
UHGV-1462202_17	eggNOG-mapper	1273707.L7TJR2_9CAUD	Phage lysozyme	NA
UHGV-1462202_17	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1462202_17	Structural annotation	MF_04110, COG3772	NA	NA
UHGV-1462202_18	PHROG	phrog_4004	NA	unknown function
UHGV-1462202_18	Structural annotation	PF21611, MF_01020, TIGR03188	NA	NA
UHGV-1462202_19	PHROG	phrog_1152	Rz-like spanin	lysis
UHGV-1462202_19	UniRef90	UniRef90_Q5F6B0	Phage associated protein	NA
UHGV-1462202_19	eggNOG-mapper	546268.NEISUBOT_05195	NA	NA
UHGV-1462202_20	PHROG	phrog_5902	NA	unknown function
UHGV-1462202_20	UniRef90	UniRef90_UPI00195D46D6	terminase	NA
UHGV-1462202_20	eggNOG-mapper	1122963.AUHB01000029_gene4522	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-1462202_20	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1462202_20	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1462202_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1462202_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1462202_21	UniRef90	UniRef90_UPI0019567B2E	terminase small subunit	NA
UHGV-1462202_21	eggNOG-mapper	1279038.KB907345_gene3477	Terminase small subunit	NA
UHGV-1462202_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1462202_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1462202_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1462202_22	UniRef90	UniRef90_A0A3D1IXE9	Sigma70_r4 domain-containing protein	NA
UHGV-1462202_22	eggNOG-mapper	360910.BAV0416	NA	NA
UHGV-1462202_22	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-1462202_22	Structural annotation	PF02796	NA	NA
UHGV-1462202_23	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1462202_23	UniRef90	UniRef90_UPI001958C138	recombination protein NinB	NA
UHGV-1462202_23	eggNOG-mapper	546268.NEISUBOT_05157	NinB protein	NA
UHGV-1462202_23	Pfam	PF05772	NinB protein	NinB
UHGV-1462202_23	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1462202_24	PHROG	phrog_1588	NA	unknown function
UHGV-1462202_24	UniRef90	UniRef90_UPI00036B77EC	Ref family recombination enhancement nuclease	NA
UHGV-1462202_24	eggNOG-mapper	573.JG24_10890	Recombination enhancement, RecA-dependent nuclease	NA
UHGV-1462202_24	Pfam	PF16786	Recombination enhancement, RecA-dependent nuclease	RecA_dep_nuc
UHGV-1462202_24	Structural annotation	PF16786	NA	NA
UHGV-1462202_29	PHROG	phrog_4824	NA	unknown function
UHGV-1462202_29	UniRef90	UniRef90_UPI0018C43B86	NA	NA
UHGV-1462202_29	eggNOG-mapper	641149.HMPREF9016_01178	NA	NA
UHGV-1462202_29	Pfam	PF11753	NA	DUF3310
UHGV-1462202_30	UniRef90	UniRef90_A0A7H9WIC6	Putative phage associated protein	NA
UHGV-1462202_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1462202_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1462202_31	UniRef90	UniRef90_A0A1F0E211	DNA helicase	NA
UHGV-1462202_31	eggNOG-mapper	557598.LHK_01506	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-1462202_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1462202_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1462202_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-1462202_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1462202_32	PHROG	phrog_11718	NA	unknown function
UHGV-1462202_32	UniRef90	UniRef90_UPI000B31B5A6	DnaT-like ssDNA-binding domain-containing protein	NA
UHGV-1462202_32	eggNOG-mapper	1190603.AJYD01000005_gene4024	DnaD domain protein	NA
UHGV-1462202_32	Pfam	PF17948	DnaT DNA-binding domain	DnaT
UHGV-1462202_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1462202_33	PHROG	phrog_4973	NA	unknown function
UHGV-1462202_33	UniRef90	UniRef90_UPI001A4F302B	helix-turn-helix domain-containing protein	NA
UHGV-1462202_33	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1462202_33	Structural annotation	PF14090, NF040939	NA	NA
UHGV-1462202_34	UniRef90	UniRef90_A0A7H9WF02	Phage associated protein	NA
UHGV-1462202_35	UniRef90	UniRef90_A0A8B3VUK1	Phage associated protein	NA
UHGV-1462202_36	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-1462202_36	UniRef90	UniRef90_A0A5U2F6D8	Helix-turn-helix domain-containing protein	NA
UHGV-1462202_36	eggNOG-mapper	741091.Rahaq_4541	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-1462202_36	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-1462202_36	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-1462202_36	Structural annotation	PF15943, TIGR02607, COG4197	NA	NA
UHGV-1462202_37	UniRef90	UniRef90_UPI0003037E61	helix-turn-helix domain-containing protein	NA
UHGV-1462202_37	eggNOG-mapper	1286093.C266_19173	Peptidase S24-like	NA
UHGV-1462202_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1462202_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1462202_38	eggNOG-mapper	1198232.CYCME_0145	NA	NA
UHGV-1462202_39	UniRef90	UniRef90_B4RJ82	Putative phage associated protein	NA
UHGV-1462202_46	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-1462202_46	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1462202_46	UniRef90	UniRef90_UPI00066BF082	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1462202_46	eggNOG-mapper	641147.HMPREF9021_02702	NA	NA
UHGV-1462202_46	Pfam	PF12684	NA	DUF3799
UHGV-1462202_46	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1462202_46	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-1462202_47	PHROG	phrog_3657	NA	unknown function
UHGV-1462202_47	UniRef90	UniRef90_A0A3S4U913	Phage recombinase	NA
UHGV-1462202_47	eggNOG-mapper	470.IX87_10630	NA	NA
UHGV-1462202_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1462202_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1462202_50	UniRef90	UniRef90_UPI000D386AF8	single-stranded DNA-binding protein	NA
UHGV-1462202_50	eggNOG-mapper	546266.NEIMUCOT_04555	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1462202_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1462202_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1462202_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1462202_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1462202_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1462202_51	PHROG	phrog_37882	NA	unknown function
UHGV-1462202_52	UniRef90	UniRef90_Q5F6E3	Phage associated protein	NA
UHGV-1462202_52	eggNOG-mapper	546268.NEISUBOT_05131	NA	NA
UHGV-1462202_54	UniRef90	UniRef90_A0A5C4RIX5	NA	NA
UHGV-1462202_54	Structural annotation	PF04448, NF041588	NA	NA
UHGV-1462202_56	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-1462202_56	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-1462202_56	UniRef90	UniRef90_UPI00037D01A2	AlpA family phage regulatory protein	NA
UHGV-1462202_56	eggNOG-mapper	748280.NH8B_1936	Transcriptional regulator	NA
UHGV-1462202_56	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-1462202_56	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1462202_56	Structural annotation	PF05930, NF033499, COG3311	NA	NA