UHGV-1462482

Genome information

Genome length 35,434 bps

CDS count 35

Completeness 59.25% (medium-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-1462482
vOTU ID	vOTU-025371
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0241535
BioSample	SAMEA2738133
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.44
Jumbo phage	No

Genome content
Genome length	35,434 bps
GC content	40.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	95.29%
Average CDS length	968.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1462482_1	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-1462482_1	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1462482_1	UniRef90	UniRef90_A0A6G5Y767	SF3 helicase domain-containing protein	NA
UHGV-1462482_1	eggNOG-mapper	475178.B2BTL9_9CAUD	nucleic acid binding	NA
UHGV-1462482_1	Pfam	PF19263	NA	DUF5906
UHGV-1462482_1	Structural annotation	PF00136, PF09250, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-1462482_2	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1462482_2	eggNOG-mapper	475178.B2BTN0_9CAUD	NA	NA
UHGV-1462482_2	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-1462482_3	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1462482_3	UniRef90	UniRef90_A0A5J6D7C2	Helicase	NA
UHGV-1462482_3	eggNOG-mapper	742740.HMPREF9474_02299	Helicase conserved C-terminal domain	NA
UHGV-1462482_3	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1462482_3	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-1462482_4	UniRef90	UniRef90_A0A5J6TG45	Nuclease	NA
UHGV-1462482_4	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-1462482_4	Structural annotation	PF01870, COG1591	NA	NA
UHGV-1462482_5	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1462482_5	UniRef90	UniRef90_D4P7X3	Gp105	NA
UHGV-1462482_5	eggNOG-mapper	1476888.X4YEL4_9CAUD	NA	NA
UHGV-1462482_5	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1462482_6	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1462482_6	UniRef90	UniRef90_A0A6M3SVN7	Helix-turn-helix DNA binding domain protein	NA
UHGV-1462482_6	eggNOG-mapper	428125.CLOLEP_01400	Bacterial regulatory proteins, luxR family	NA
UHGV-1462482_6	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1462482_6	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1462482_6	Structural annotation	PF05183	NA	NA
UHGV-1462482_7	PHROG	phrog_4303	NA	unknown function
UHGV-1462482_7	UniRef90	UniRef90_D4P7L8	Gp107	NA
UHGV-1462482_7	eggNOG-mapper	691965.D4P7L8_9CAUD	NA	NA
UHGV-1462482_9	PHROG	phrog_6918	holin	lysis
UHGV-1462482_9	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1462482_11	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1462482_11	UniRef90	UniRef90_X4YEE5	Homing endonuclease	NA
UHGV-1462482_11	eggNOG-mapper	475178.B2BTG9_9CAUD	NA	NA
UHGV-1462482_12	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1462482_12	PHROG	phrog_32123	NA	unknown function
UHGV-1462482_12	UniRef90	UniRef90_UPI001CED1953	collagen-like protein	NA
UHGV-1462482_12	eggNOG-mapper	997830.HMPREF1124_0614	Collagen triple helix repeat (20 copies)	NA
UHGV-1462482_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1462482_12	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1462482_12	Structural annotation	PF10651, NF032891	NA	NA
UHGV-1462482_13	PHROG	phrog_8577	endolysin	lysis
UHGV-1462482_13	UniRef90	UniRef90_UPI00128D03D8	CHAP domain-containing protein	NA
UHGV-1462482_13	eggNOG-mapper	1314.HKU360_01469	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1462482_13	Pfam	PF05257	CHAP domain	CHAP
UHGV-1462482_13	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1462482_13	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1462482_13	Structural annotation	PF19127, PF05257, TIGR04035, TIGR02594, COG5263	NA	NA
UHGV-1462482_15	PHROG	phrog_7021	NA	unknown function
UHGV-1462482_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1462482_16	UniRef90	UniRef90_A0A1I7FAT9	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1462482_16	eggNOG-mapper	742733.HMPREF9469_05033	Phage Terminase	NA
UHGV-1462482_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1462482_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1462482_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1462482_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1462482_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-1462482_17	UniRef90	UniRef90_A0A3C2CGL3	Phage portal protein	NA
UHGV-1462482_17	eggNOG-mapper	742740.HMPREF9474_02271	Phage portal protein	NA
UHGV-1462482_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1462482_18	KOfam	K06904	NA	NA
UHGV-1462482_18	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-1462482_18	UniRef90	UniRef90_A0A6G5Y7H0	BIG2 domain-containing protein	NA
UHGV-1462482_18	eggNOG-mapper	1476888.X4YUP1_9CAUD	peptidase activity	NA
UHGV-1462482_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1462482_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1462482_18	Structural annotation	PF05065, PF04586, MF_04119, TIGR01554, TIGR01543, COG4653, COG3740	NA	NA
UHGV-1462482_19	PHROG	phrog_4270	NA	unknown function
UHGV-1462482_19	eggNOG-mapper	428125.CLOLEP_01413	NA	NA
UHGV-1462482_20	PHROG	phrog_2645	major tail protein	tail
UHGV-1462482_20	UniRef90	UniRef90_A0A2L1IW72	Major tail protein	NA
UHGV-1462482_20	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-1462482_20	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1462482_21	PHROG	phrog_4282	NA	unknown function
UHGV-1462482_21	eggNOG-mapper	742733.HMPREF9469_05024	NA	NA
UHGV-1462482_22	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1462482_23	PHROG	phrog_4338	NA	unknown function
UHGV-1462482_23	eggNOG-mapper	1537917.JU82_06570	NA	NA
UHGV-1462482_24	UniRef90	UniRef90_UPI000659DD5E	HK97 gp10 family phage protein	NA
UHGV-1462482_24	eggNOG-mapper	478749.BRYFOR_08514	NA	NA
UHGV-1462482_25	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-1462482_25	UniRef90	UniRef90_UPI001C26BAEC	tape measure protein	NA
UHGV-1462482_25	eggNOG-mapper	742733.HMPREF9469_05020	phage tail tape measure protein	NA
UHGV-1462482_25	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1462482_25	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1462482_25	COG	COG5412	Phage-related protein	NA
UHGV-1462482_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1462482_26	UniRef90	UniRef90_UPI00047A2AF3	phage tail family protein	NA
UHGV-1462482_26	eggNOG-mapper	1540257.JQMW01000004_gene407	tail component	NA
UHGV-1462482_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-1462482_26	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1462482_27	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1462482_27	eggNOG-mapper	1201292.DR75_1501	Prophage endopeptidase tail	NA
UHGV-1462482_27	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1462482_27	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1462482_27	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA