UHGV-1462780

Genome information

Genome length 22,483 bps

CDS count 45

Completeness 58.74% (medium-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-1462780
vOTU ID	vOTU-030600
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0164887
BioSample	SAMN05414975
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.64
Jumbo phage	No

Genome content
Genome length	22,483 bps
GC content	62.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.69%
Average CDS length	462.67 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1462780_1	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1462780_1	UniRef90	UniRef90_A0A6A8M6L6	HK97 gp10 family phage protein	NA
UHGV-1462780_1	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1462780_1	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1462780_1	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1462780_1	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1462780_3	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1462780_3	UniRef90	UniRef90_A4E787	Phage protein F-like protein	NA
UHGV-1462780_3	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1462780_3	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1462780_3	COG	COG2369	NA	NA
UHGV-1462780_3	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1462780_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-1462780_4	UniRef90	UniRef90_A0A174A8R0	Phage portal protein, SPP1 family	NA
UHGV-1462780_4	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1462780_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1462780_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1462780_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1462780_5	PHROG	phrog_10250	NA	unknown function
UHGV-1462780_5	UniRef90	UniRef90_A0A243IPB6	Terminase	NA
UHGV-1462780_5	eggNOG-mapper	86416.Clopa_2537	phage terminase, large subunit, PBSX family	NA
UHGV-1462780_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1462780_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1462780_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-1462780_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1462780_6	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1462780_6	UniRef90	UniRef90_A0A350TI86	LuxR family transcriptional regulator	NA
UHGV-1462780_6	eggNOG-mapper	1200557.JHWV01000006_gene1733	transposase activity	NA
UHGV-1462780_6	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1462780_6	Structural annotation	PF07141	NA	NA
UHGV-1462780_7	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1462780_7	PHROG	phrog_7405	NA	unknown function
UHGV-1462780_7	UniRef90	UniRef90_A0A3A6MTT0	Chromosome partitioning protein ParB	NA
UHGV-1462780_7	eggNOG-mapper	1200557.JHWV01000006_gene1734	ParB-like nuclease domain	NA
UHGV-1462780_7	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1462780_7	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1462780_8	PHROG	phrog_7858	NA	unknown function
UHGV-1462780_8	UniRef90	UniRef90_UPI0014872BB8	peptidoglycan-binding protein	NA
UHGV-1462780_8	eggNOG-mapper	1200557.JHWV01000006_gene1735	NA	NA
UHGV-1462780_8	Structural annotation	PF11039, PF03602, MF_02125, MF_00084, NF007527, TIGR00571, COG3981, COG0338	NA	NA
UHGV-1462780_9	PHROG	phrog_2450	NA	unknown function
UHGV-1462780_9	UniRef90	UniRef90_A0A372UWN9	NA	NA
UHGV-1462780_9	eggNOG-mapper	411901.BACCAC_01161	NA	NA
UHGV-1462780_10	eggNOG-mapper	411467.BACCAP_03367	NA	NA
UHGV-1462780_11	UniRef90	UniRef90_A0A1Y4BCD8	HTH cro/C1-type domain-containing protein	NA
UHGV-1462780_11	eggNOG-mapper	521095.Apar_0597	sequence-specific DNA binding	NA
UHGV-1462780_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1462780_11	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1462780_11	Structural annotation	PF14590, TIGR03070, COG2944	NA	NA
UHGV-1462780_20	PHROG	phrog_21525	NA	unknown function
UHGV-1462780_22	eggNOG-mapper	479437.Elen_0814	NA	NA
UHGV-1462780_22	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1462780_23	Structural annotation	PF09947	NA	NA
UHGV-1462780_24	eggNOG-mapper	521003.COLINT_02330	NA	NA
UHGV-1462780_24	Structural annotation	PF16090	NA	NA
UHGV-1462780_25	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1462780_25	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1462780_25	UniRef90	UniRef90_A0A3N0I8V0	dUTP diphosphatase	NA
UHGV-1462780_25	eggNOG-mapper	1120960.ATXG01000002_gene2951	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1462780_25	Pfam	PF00692	dUTPase	dUTPase
UHGV-1462780_25	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1462780_25	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1462780_25	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1462780_29	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1462780_29	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1462780_29	UniRef90	UniRef90_A0A3N0IB46	IstB_IS21 domain-containing protein	NA
UHGV-1462780_29	eggNOG-mapper	1396.DJ87_956	Bacterial dnaA protein	NA
UHGV-1462780_29	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1462780_29	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1462780_29	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-1462780_30	PHROG	phrog_15768	NA	unknown function
UHGV-1462780_30	UniRef90	UniRef90_A0A1H4JD01	NA	NA
UHGV-1462780_30	eggNOG-mapper	521003.COLINT_02320	NA	NA
UHGV-1462780_30	Pfam	PF19808	NA	DUF6291
UHGV-1462780_30	Structural annotation	PF19808	NA	NA
UHGV-1462780_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1462780_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1462780_32	UniRef90	UniRef90_A0A369L8N2	Single-stranded DNA-binding protein	NA
UHGV-1462780_32	eggNOG-mapper	471855.Shel_27910	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1462780_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1462780_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1462780_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1462780_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1462780_32	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1462780_33	PHROG	phrog_4973	NA	unknown function
UHGV-1462780_33	UniRef90	UniRef90_UPI000E3485C3	helix-turn-helix domain-containing protein	NA
UHGV-1462780_33	eggNOG-mapper	880073.Calab_0752	Helix-turn-helix domain	NA
UHGV-1462780_33	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1462780_33	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1462780_34	PHROG	phrog_1389	NA	unknown function
UHGV-1462780_34	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-1462780_34	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-1462780_35	PHROG	phrog_11717	NA	unknown function
UHGV-1462780_35	eggNOG-mapper	1410650.JHWL01000003_gene2852	NA	NA
UHGV-1462780_35	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-1462780_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1462780_37	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1462780_37	UniRef90	UniRef90_A0A374U439	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1462780_37	eggNOG-mapper	508419.F8J189_9CAUD	magnesium ion binding	NA
UHGV-1462780_37	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1462780_40	PHROG	phrog_36956	NA	unknown function
UHGV-1462780_41	UniRef90	UniRef90_UPI001F4D634F	helix-turn-helix domain-containing protein	NA
UHGV-1462780_41	eggNOG-mapper	471855.Shel_14120	Helix-turn-helix domain	NA
UHGV-1462780_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1462780_42	COG	COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	NA
UHGV-1462780_45	Pfam	PF01381	Helix-turn-helix	HTH_3