UHGV-1463040

Genome information

vOTU vOTU-072080

Genome length 41,398 bps

CDS count 74

Completeness 97.97% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-1463040
vOTU ID	vOTU-072080
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0275868
BioSample	SAMEA3664690
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.93
Jumbo phage	No

Genome content
Genome length	41,398 bps
GC content	54.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	91.61%
Average CDS length	515.84 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1463040_1	PHROG	phrog_4433	NA	unknown function
UHGV-1463040_1	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-1463040_1	eggNOG-mapper	269482.Bcep1808_1157	Flagellar Assembly Protein A	NA
UHGV-1463040_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1463040_1	Structural annotation	NF000318	NA	NA
UHGV-1463040_4	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-1463040_4	Structural annotation	PF17516, NF007197	NA	NA
UHGV-1463040_5	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1463040_5	UniRef90	UniRef90_UPI001CBC74BC	Rha family transcriptional regulator	NA
UHGV-1463040_5	eggNOG-mapper	748224.HMPREF9436_01449	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1463040_5	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1463040_5	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1463040_5	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1463040_5	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1463040_6	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-1463040_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1463040_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1463040_7	UniRef90	UniRef90_UPI001CBE4822	helix-turn-helix domain-containing protein	NA
UHGV-1463040_7	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1463040_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1463040_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1463040_7	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1463040_9	eggNOG-mapper	641112.ACOK01000103_gene519	NA	NA
UHGV-1463040_10	UniRef90	UniRef90_UPI00047F3EF3	SAP domain-containing protein	NA
UHGV-1463040_10	eggNOG-mapper	1280696.ATVY01000034_gene3237	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-1463040_10	Pfam	PF08461	Ribonuclease R winged-helix domain	HTH_12
UHGV-1463040_13	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-1463040_13	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1463040_13	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-1463040_14	KOfam	K14059	int; integrase	NA
UHGV-1463040_14	PHROG	phrog_1	integrase	integration and excision
UHGV-1463040_14	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-1463040_14	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-1463040_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1463040_14	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1463040_14	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1463040_16	Structural annotation	PF12510	NA	NA
UHGV-1463040_17	PHROG	phrog_20016	NA	unknown function
UHGV-1463040_17	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1463040_17	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1463040_17	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1463040_18	PHROG	phrog_16490	NA	unknown function
UHGV-1463040_18	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1463040_19	PHROG	phrog_22984	NA	unknown function
UHGV-1463040_20	PHROG	phrog_21718	NA	unknown function
UHGV-1463040_20	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1463040_21	PHROG	phrog_3754	NA	unknown function
UHGV-1463040_21	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-1463040_22	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-1463040_22	Pfam	PF09274	ParG	ParG
UHGV-1463040_25	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-1463040_26	PHROG	phrog_15303	NA	unknown function
UHGV-1463040_28	KOfam	K07273	acm; lysozyme	NA
UHGV-1463040_28	PHROG	phrog_291	endolysin	lysis
UHGV-1463040_28	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-1463040_28	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-1463040_28	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1463040_28	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1463040_28	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-1463040_29	PHROG	phrog_1382	NA	unknown function
UHGV-1463040_29	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-1463040_30	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-1463040_31	PHROG	phrog_17147	NA	unknown function
UHGV-1463040_31	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-1463040_31	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-1463040_32	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-1463040_32	Structural annotation	PF10651	NA	NA
UHGV-1463040_33	UniRef90	UniRef90_A0A2J4JSG1	XkdX family protein	NA
UHGV-1463040_33	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1463040_33	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1463040_33	Structural annotation	PF09693	NA	NA
UHGV-1463040_34	PHROG	phrog_29248	NA	unknown function
UHGV-1463040_35	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-1463040_35	UniRef90	UniRef90_A0A1Q6KPN8	NA	NA
UHGV-1463040_35	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-1463040_35	Pfam	PF19789	NA	DUF6273
UHGV-1463040_35	Structural annotation	PF19789, PF18911	NA	NA
UHGV-1463040_37	PHROG	phrog_3558	tail protein	tail
UHGV-1463040_37	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-1463040_37	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-1463040_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1463040_37	COG	COG4926	Phage-related protein	NA
UHGV-1463040_37	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1463040_38	UniRef90	UniRef90_A0A7G9WF98	MtfA protein	NA
UHGV-1463040_38	eggNOG-mapper	1123075.AUDP01000020_gene1523	phage tail	NA
UHGV-1463040_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-1463040_38	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1463040_39	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1463040_39	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-1463040_39	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-1463040_39	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1463040_39	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1463040_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1463040_39	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1463040_42	PHROG	phrog_885	major tail protein	tail
UHGV-1463040_42	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1463040_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1463040_43	Structural annotation	PF13554	NA	NA
UHGV-1463040_44	PHROG	phrog_17977	NA	unknown function
UHGV-1463040_44	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-1463040_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1463040_46	PHROG	phrog_544	major head protein	head and packaging
UHGV-1463040_46	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-1463040_46	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1463040_46	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1463040_47	Structural annotation	PF06810	NA	NA
UHGV-1463040_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1463040_50	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-1463040_50	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-1463040_50	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1463040_50	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1463040_51	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1463040_51	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-1463040_51	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1463040_51	COG	COG2369	NA	NA
UHGV-1463040_51	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1463040_53	PHROG	phrog_64	portal protein	head and packaging
UHGV-1463040_53	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-1463040_53	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-1463040_53	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1463040_53	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1463040_54	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1463040_54	PHROG	phrog_10250	NA	unknown function
UHGV-1463040_54	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-1463040_54	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-1463040_54	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1463040_54	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1463040_54	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1463040_54	COG	COG1783	Phage terminase large subunit	NA
UHGV-1463040_54	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1463040_55	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-1463040_55	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-1463040_55	Structural annotation	PF04218	NA	NA
UHGV-1463040_56	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1463040_56	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1463040_57	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-1463040_58	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1463040_58	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1463040_58	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1463040_58	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-1463040_58	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1463040_58	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1463040_58	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1463040_59	PHROG	phrog_7711	NA	unknown function
UHGV-1463040_59	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-1463040_61	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1463040_61	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-1463040_61	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1463040_61	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1463040_62	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1463040_62	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-1463040_62	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1463040_62	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1463040_64	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-1463040_65	Structural annotation	PF11417	NA	NA
UHGV-1463040_66	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1463040_66	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1463040_66	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-1463040_66	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-1463040_66	Pfam	PF19808	NA	DUF6291
UHGV-1463040_66	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1463040_66	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1463040_66	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-1463040_67	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1463040_67	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1463040_67	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-1463040_67	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1463040_67	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1463040_67	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1463040_67	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1463040_67	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1463040_67	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1463040_69	Structural annotation	PF06718	NA	NA
UHGV-1463040_73	Structural annotation	PF10743, NF033787	NA	NA
UHGV-1463040_74	PHROG	phrog_27197	NA	unknown function
UHGV-1463040_74	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-1463040_74	COG	COG5164	Transcription elongation factor SPT5	NA