UHGV-1463227

Genome information

Genome length 20,442 bps

CDS count 27

Completeness 60.88% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1463227
vOTU ID	vOTU-030210
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0149599
BioSample	SAMN05414969
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.54
Jumbo phage	No

Genome content
Genome length	20,442 bps
GC content	62.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	97.51%
Average CDS length	741.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1463227_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1463227_1	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-1463227_1	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-1463227_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1463227_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1463227_3	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-1463227_3	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1463227_3	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1463227_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1463227_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1463227_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1463227_3	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-1463227_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-1463227_4	UniRef90	UniRef90_U2SKC6	Phage portal protein, HK97 family	NA
UHGV-1463227_4	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-1463227_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1463227_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1463227_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1463227_4	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1463227_5	KOfam	K06904	NA	NA
UHGV-1463227_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1463227_5	UniRef90	UniRef90_A0A1F2PDD9	Caudovirus prohead protease	NA
UHGV-1463227_5	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-1463227_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1463227_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1463227_5	COG	COG3740	Phage head maturation protease	NA
UHGV-1463227_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1463227_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-1463227_6	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1463227_6	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-1463227_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1463227_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1463227_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1463227_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1463227_7	PHROG	phrog_2550	NA	unknown function
UHGV-1463227_7	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-1463227_7	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-1463227_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1463227_8	PHROG	phrog_19734	NA	unknown function
UHGV-1463227_8	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-1463227_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1463227_9	eggNOG-mapper	908340.HMPREF9406_2574	NA	NA
UHGV-1463227_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1463227_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1463227_10	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-1463227_10	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1463227_10	Structural annotation	TIGR01725	NA	NA
UHGV-1463227_11	PHROG	phrog_88	major tail protein	tail
UHGV-1463227_11	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-1463227_11	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1463227_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1463227_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1463227_12	PHROG	phrog_2115	tail protein	tail
UHGV-1463227_12	Structural annotation	PF11836	NA	NA
UHGV-1463227_14	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-1463227_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1463227_14	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-1463227_14	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-1463227_14	COG	COG5283	Phage-related tail protein	NA
UHGV-1463227_14	Structural annotation	COG5280	NA	NA
UHGV-1463227_15	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-1463227_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1463227_16	PHROG	phrog_13879	NA	unknown function
UHGV-1463227_16	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1463227_16	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1463227_17	PHROG	phrog_1589	NA	unknown function
UHGV-1463227_17	UniRef90	UniRef90_A2EQK5	Surface antigen BspA-like	NA
UHGV-1463227_17	eggNOG-mapper	5722.XP_001317274.1	protein kinase A regulatory subunit binding	NA
UHGV-1463227_17	Pfam	PF12810	Glycine rich protein	Gly_rich
UHGV-1463227_17	Structural annotation	PF12810, PF16893, TIGR04488, COG3979	NA	NA
UHGV-1463227_18	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-1463227_18	PHROG	phrog_11157	NA	unknown function
UHGV-1463227_18	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-1463227_18	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-1463227_18	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1463227_18	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-1463227_18	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1463227_18	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1463227_19	PHROG	phrog_18725	NA	unknown function
UHGV-1463227_19	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-1463227_19	Structural annotation	PF13754, COG2372	NA	NA
UHGV-1463227_22	UniRef90	UniRef90_A0A1Y3Z0U4	XkdX family protein (Fragment)	NA
UHGV-1463227_22	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1463227_23	PHROG	phrog_1863	NA	unknown function
UHGV-1463227_23	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-1463227_25	PHROG	phrog_1129	holin	lysis
UHGV-1463227_25	UniRef90	UniRef90_UPI001EDED0D7	phage holin family protein	NA
UHGV-1463227_25	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1463227_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1463227_25	Structural annotation	PF06946	NA	NA
UHGV-1463227_26	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1463227_26	PHROG	phrog_435	endolysin	lysis
UHGV-1463227_26	UniRef90	UniRef90_UPI001BCEA4F1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1463227_26	eggNOG-mapper	1382305.AZUC01000009_gene1779	Ami_3	NA
UHGV-1463227_26	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1463227_26	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1463227_26	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1463227_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1463227_26	Structural annotation	PF01520, PF09992, PF01471, MF_00562, TIGR02883, COG0860, COG4632, COG3409	NA	NA
UHGV-1463227_27	KOfam	K14059	int; integrase	NA
UHGV-1463227_27	PHROG	phrog_1	integrase	integration and excision
UHGV-1463227_27	UniRef90	UniRef90_UPI001EDE32BF	site-specific integrase	NA
UHGV-1463227_27	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-1463227_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1463227_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1463227_27	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA